Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04638 and H281DRAFT_04639 are separated by 5 nucleotides H281DRAFT_04639 and H281DRAFT_04640 are separated by 68 nucleotides
H281DRAFT_04638: H281DRAFT_04638 - periplasmic chaperone for outer membrane proteins SurA, at 38,645 to 40,054
_04638
H281DRAFT_04639: H281DRAFT_04639 - 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262), at 40,060 to 41,070
_04639
H281DRAFT_04640: H281DRAFT_04640 - dimethyladenosine transferase, at 41,139 to 41,969
_04640
Position (kb) 40
41
42 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 40.052 kb on + strand at 40.052 kb on + strand at 40.052 kb on + strand at 40.248 kb on - strand, within H281DRAFT_04639 at 40.351 kb on + strand, within H281DRAFT_04639 at 40.351 kb on + strand, within H281DRAFT_04639 at 40.480 kb on + strand, within H281DRAFT_04639 at 40.481 kb on - strand, within H281DRAFT_04639 at 40.633 kb on - strand, within H281DRAFT_04639 at 40.884 kb on - strand at 40.898 kb on - strand, within H281DRAFT_04639 at 40.898 kb on - strand, within H281DRAFT_04639 at 41.126 kb on + strand at 41.180 kb on + strand at 41.486 kb on - strand at 41.508 kb on + strand, within H281DRAFT_04640 at 41.509 kb on - strand, within H281DRAFT_04640 at 41.665 kb on - strand, within H281DRAFT_04640 at 41.844 kb on - strand, within H281DRAFT_04640 at 41.931 kb on + strand at 41.974 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 40,052 + -0.3 40,052 + +0.9 40,052 + -0.2 40,248 - H281DRAFT_04639 0.19 -2.6 40,351 + H281DRAFT_04639 0.29 -0.1 40,351 + H281DRAFT_04639 0.29 -0.3 40,480 + H281DRAFT_04639 0.42 -3.1 40,481 - H281DRAFT_04639 0.42 -2.0 40,633 - H281DRAFT_04639 0.57 -3.3 40,884 - -0.6 40,898 - H281DRAFT_04639 0.83 -0.9 40,898 - H281DRAFT_04639 0.83 -2.0 41,126 + -0.3 41,180 + -1.1 41,486 - -0.9 41,508 + H281DRAFT_04640 0.44 +1.4 41,509 - H281DRAFT_04640 0.45 -1.0 41,665 - H281DRAFT_04640 0.63 -0.1 41,844 - H281DRAFT_04640 0.85 -1.4 41,931 + -0.5 41,974 + +0.3
Or see this region's nucleotide sequence