Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04633

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04632 and H281DRAFT_04633 are separated by 102 nucleotidesH281DRAFT_04633 and H281DRAFT_04634 are separated by 309 nucleotides H281DRAFT_04632: H281DRAFT_04632 - LysR family transcriptional regulator, glycine cleavage system transcriptional activator, at 30,527 to 31,447 _04632 H281DRAFT_04633: H281DRAFT_04633 - (3S)-malyl-CoA thioesterase, at 31,550 to 31,945 _04633 H281DRAFT_04634: H281DRAFT_04634 - ATP-binding cassette, subfamily B, at 32,255 to 34,144 _04634 Position (kb) 31 32Strain fitness (log2 ratio) -1 0 1 2at 30.663 kb on + strand, within H281DRAFT_04632at 30.663 kb on + strand, within H281DRAFT_04632at 30.664 kb on - strand, within H281DRAFT_04632at 30.664 kb on - strand, within H281DRAFT_04632at 30.728 kb on + strand, within H281DRAFT_04632at 30.729 kb on - strand, within H281DRAFT_04632at 30.741 kb on + strand, within H281DRAFT_04632at 30.741 kb on + strand, within H281DRAFT_04632at 30.890 kb on + strand, within H281DRAFT_04632at 30.891 kb on - strand, within H281DRAFT_04632at 31.316 kb on + strand, within H281DRAFT_04632at 31.329 kb on - strand, within H281DRAFT_04632at 31.392 kb on + strandat 31.392 kb on + strandat 31.393 kb on - strandat 31.412 kb on + strandat 31.413 kb on - strandat 31.413 kb on - strandat 31.476 kb on + strandat 31.476 kb on + strandat 31.477 kb on - strandat 31.477 kb on - strandat 31.487 kb on + strandat 31.488 kb on - strandat 31.498 kb on + strandat 31.498 kb on + strandat 31.499 kb on - strandat 31.499 kb on - strandat 31.507 kb on + strandat 31.602 kb on + strand, within H281DRAFT_04633at 31.602 kb on + strand, within H281DRAFT_04633at 31.602 kb on + strand, within H281DRAFT_04633at 31.602 kb on + strand, within H281DRAFT_04633at 31.603 kb on - strand, within H281DRAFT_04633at 31.622 kb on + strand, within H281DRAFT_04633at 31.651 kb on + strand, within H281DRAFT_04633at 31.651 kb on + strand, within H281DRAFT_04633at 31.651 kb on + strand, within H281DRAFT_04633at 31.662 kb on + strand, within H281DRAFT_04633at 31.662 kb on + strand, within H281DRAFT_04633at 31.663 kb on - strand, within H281DRAFT_04633at 31.691 kb on - strand, within H281DRAFT_04633at 31.829 kb on - strand, within H281DRAFT_04633at 31.937 kb on - strandat 31.937 kb on - strandat 32.007 kb on - strandat 32.126 kb on + strandat 32.127 kb on - strandat 32.339 kb on + strandat 32.339 kb on + strandat 32.351 kb on + strandat 32.351 kb on + strandat 32.352 kb on - strandat 32.352 kb on - strandat 32.434 kb on + strandat 32.434 kb on + strandat 32.435 kb on - strandat 32.435 kb on - strandat 32.435 kb on - strandat 32.560 kb on + strand, within H281DRAFT_04634at 32.561 kb on - strand, within H281DRAFT_04634at 32.820 kb on - strand, within H281DRAFT_04634at 32.820 kb on - strand, within H281DRAFT_04634at 32.828 kb on + strand, within H281DRAFT_04634at 32.828 kb on + strand, within H281DRAFT_04634at 32.828 kb on + strand, within H281DRAFT_04634at 32.828 kb on + strand, within H281DRAFT_04634at 32.828 kb on + strand, within H281DRAFT_04634at 32.864 kb on + strandat 32.865 kb on - strand, within H281DRAFT_04634at 32.865 kb on - strand, within H281DRAFT_04634

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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30,663 + H281DRAFT_04632 0.15 -1.0
30,663 + H281DRAFT_04632 0.15 -0.1
30,664 - H281DRAFT_04632 0.15 -0.1
30,664 - H281DRAFT_04632 0.15 +0.1
30,728 + H281DRAFT_04632 0.22 -0.2
30,729 - H281DRAFT_04632 0.22 -0.4
30,741 + H281DRAFT_04632 0.23 -0.1
30,741 + H281DRAFT_04632 0.23 -0.1
30,890 + H281DRAFT_04632 0.39 +0.1
30,891 - H281DRAFT_04632 0.40 +0.5
31,316 + H281DRAFT_04632 0.86 -1.4
31,329 - H281DRAFT_04632 0.87 +0.4
31,392 + -0.2
31,392 + +0.5
31,393 - -0.1
31,412 + +0.3
31,413 - +1.2
31,413 - +0.6
31,476 + +0.3
31,476 + +0.4
31,477 - -0.1
31,477 - -0.5
31,487 + +2.1
31,488 - -0.2
31,498 + +0.4
31,498 + -0.9
31,499 - -0.4
31,499 - +0.0
31,507 + +2.3
31,602 + H281DRAFT_04633 0.13 +0.1
31,602 + H281DRAFT_04633 0.13 +0.7
31,602 + H281DRAFT_04633 0.13 +1.0
31,602 + H281DRAFT_04633 0.13 +0.2
31,603 - H281DRAFT_04633 0.13 +1.0
31,622 + H281DRAFT_04633 0.18 -0.0
31,651 + H281DRAFT_04633 0.26 -0.6
31,651 + H281DRAFT_04633 0.26 -0.7
31,651 + H281DRAFT_04633 0.26 +0.0
31,662 + H281DRAFT_04633 0.28 -0.9
31,662 + H281DRAFT_04633 0.28 -0.1
31,663 - H281DRAFT_04633 0.29 +0.8
31,691 - H281DRAFT_04633 0.36 -0.6
31,829 - H281DRAFT_04633 0.70 -0.6
31,937 - +0.1
31,937 - -0.4
32,007 - +1.3
32,126 + -0.6
32,127 - -0.1
32,339 + +1.0
32,339 + +1.1
32,351 + +0.6
32,351 + +0.2
32,352 - -0.2
32,352 - -0.0
32,434 + +0.1
32,434 + +0.6
32,435 - -0.2
32,435 - +0.6
32,435 - +0.8
32,560 + H281DRAFT_04634 0.16 +0.0
32,561 - H281DRAFT_04634 0.16 -0.8
32,820 - H281DRAFT_04634 0.30 +1.1
32,820 - H281DRAFT_04634 0.30 -1.1
32,828 + H281DRAFT_04634 0.30 -0.4
32,828 + H281DRAFT_04634 0.30 +0.1
32,828 + H281DRAFT_04634 0.30 +0.8
32,828 + H281DRAFT_04634 0.30 +0.3
32,828 + H281DRAFT_04634 0.30 -0.3
32,864 + +1.4
32,865 - H281DRAFT_04634 0.32 +0.0
32,865 - H281DRAFT_04634 0.32 +0.7

Or see this region's nucleotide sequence