Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04529 and H281DRAFT_04530 are separated by 82 nucleotides H281DRAFT_04530 and H281DRAFT_04531 are separated by 43 nucleotides H281DRAFT_04531 and H281DRAFT_04532 are separated by 194 nucleotides
H281DRAFT_04529: H281DRAFT_04529 - K+-transporting ATPase ATPase A chain, at 258,879 to 260,684
_04529
H281DRAFT_04530: H281DRAFT_04530 - K+-transporting ATPase ATPase B chain, at 260,767 to 262,863
_04530
H281DRAFT_04531: H281DRAFT_04531 - K+-transporting ATPase ATPase C chain, at 262,907 to 263,485
_04531
H281DRAFT_04532: H281DRAFT_04532 - two-component system, OmpR family, sensor histidine kinase KdpD, at 263,680 to 266,598
_04532
Position (kb) 260
261
262
263 Strain fitness (log2 ratio) -2
-1
0
1 at 260.368 kb on - strand, within H281DRAFT_04529 at 260.436 kb on + strand, within H281DRAFT_04529 at 260.437 kb on - strand at 261.818 kb on + strand, within H281DRAFT_04530 at 262.499 kb on + strand, within H281DRAFT_04530 at 262.573 kb on + strand, within H281DRAFT_04530 at 262.829 kb on + strand at 262.830 kb on - strand at 262.833 kb on + strand at 262.833 kb on + strand at 262.833 kb on + strand at 262.833 kb on + strand at 262.834 kb on - strand at 262.834 kb on - strand at 262.834 kb on - strand at 263.100 kb on - strand, within H281DRAFT_04531 at 263.139 kb on - strand, within H281DRAFT_04531 at 263.139 kb on - strand, within H281DRAFT_04531 at 263.395 kb on + strand at 263.662 kb on - strand at 263.662 kb on - strand at 263.794 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 260,368 - H281DRAFT_04529 0.82 -0.6 260,436 + H281DRAFT_04529 0.86 -0.9 260,437 - -0.5 261,818 + H281DRAFT_04530 0.50 -1.0 262,499 + H281DRAFT_04530 0.83 +0.3 262,573 + H281DRAFT_04530 0.86 +0.5 262,829 + +0.6 262,830 - -1.9 262,833 + -1.6 262,833 + -0.1 262,833 + -0.8 262,833 + -0.1 262,834 - +0.4 262,834 - +0.2 262,834 - +0.4 263,100 - H281DRAFT_04531 0.33 +1.0 263,139 - H281DRAFT_04531 0.40 +0.1 263,139 - H281DRAFT_04531 0.40 -0.2 263,395 + +1.5 263,662 - -0.5 263,662 - +0.3 263,794 + +0.6
Or see this region's nucleotide sequence