Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04471

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04469 and H281DRAFT_04470 overlap by 4 nucleotidesH281DRAFT_04470 and H281DRAFT_04471 are separated by 29 nucleotidesH281DRAFT_04471 and H281DRAFT_04472 are separated by 201 nucleotides H281DRAFT_04469: H281DRAFT_04469 - ATP-dependent DNA helicase UvrD, at 194,926 to 197,289 _04469 H281DRAFT_04470: H281DRAFT_04470 - adenosylhomocysteine nucleosidase, at 197,286 to 198,095 _04470 H281DRAFT_04471: H281DRAFT_04471 - propionyl-CoA synthetase, at 198,125 to 200,032 _04471 H281DRAFT_04472: H281DRAFT_04472 - MFS transporter, FSR family, fosmidomycin resistance protein, at 200,234 to 201,517 _04472 Position (kb) 198 199 200 201Strain fitness (log2 ratio) -2 -1 0 1 2 3at 197.482 kb on + strand, within H281DRAFT_04470at 197.483 kb on - strandat 197.706 kb on - strand, within H281DRAFT_04470at 197.975 kb on + strand, within H281DRAFT_04470at 198.568 kb on - strand, within H281DRAFT_04471at 198.568 kb on - strand, within H281DRAFT_04471at 198.607 kb on - strand, within H281DRAFT_04471at 198.607 kb on - strand, within H281DRAFT_04471at 198.607 kb on - strand, within H281DRAFT_04471at 198.607 kb on - strand, within H281DRAFT_04471at 198.607 kb on - strand, within H281DRAFT_04471at 198.636 kb on + strand, within H281DRAFT_04471at 198.636 kb on + strand, within H281DRAFT_04471at 198.637 kb on - strandat 198.640 kb on + strandat 198.641 kb on - strand, within H281DRAFT_04471at 198.641 kb on - strand, within H281DRAFT_04471at 198.646 kb on + strand, within H281DRAFT_04471at 198.873 kb on + strand, within H281DRAFT_04471at 198.873 kb on + strand, within H281DRAFT_04471at 198.873 kb on + strand, within H281DRAFT_04471at 198.874 kb on - strand, within H281DRAFT_04471at 199.113 kb on + strand, within H281DRAFT_04471at 199.114 kb on - strand, within H281DRAFT_04471at 199.158 kb on + strand, within H281DRAFT_04471at 199.159 kb on - strand, within H281DRAFT_04471at 199.159 kb on - strand, within H281DRAFT_04471at 199.159 kb on - strand, within H281DRAFT_04471at 199.162 kb on + strand, within H281DRAFT_04471at 199.162 kb on + strand, within H281DRAFT_04471at 199.314 kb on + strand, within H281DRAFT_04471at 199.324 kb on - strand, within H281DRAFT_04471at 199.324 kb on - strand, within H281DRAFT_04471at 199.407 kb on + strand, within H281DRAFT_04471at 199.407 kb on + strandat 199.408 kb on - strand, within H281DRAFT_04471at 199.773 kb on + strand, within H281DRAFT_04471at 199.812 kb on + strand, within H281DRAFT_04471at 199.812 kb on + strand, within H281DRAFT_04471at 199.812 kb on + strand, within H281DRAFT_04471at 199.812 kb on + strand, within H281DRAFT_04471at 199.813 kb on - strand, within H281DRAFT_04471at 199.813 kb on - strand, within H281DRAFT_04471at 199.813 kb on - strand, within H281DRAFT_04471at 199.813 kb on - strand, within H281DRAFT_04471at 199.814 kb on + strand, within H281DRAFT_04471at 199.814 kb on + strand, within H281DRAFT_04471at 200.131 kb on + strandat 200.131 kb on + strandat 200.131 kb on + strandat 200.132 kb on - strandat 200.132 kb on - strandat 200.132 kb on - strandat 200.137 kb on - strandat 200.316 kb on + strandat 200.316 kb on + strandat 200.317 kb on - strandat 200.317 kb on - strandat 200.322 kb on + strandat 200.322 kb on + strandat 200.322 kb on + strandat 200.323 kb on - strandat 200.323 kb on - strandat 200.584 kb on - strand, within H281DRAFT_04472at 200.718 kb on + strand, within H281DRAFT_04472at 200.718 kb on + strand, within H281DRAFT_04472at 200.740 kb on - strand, within H281DRAFT_04472at 200.740 kb on - strand, within H281DRAFT_04472at 200.745 kb on + strand, within H281DRAFT_04472at 200.746 kb on - strand, within H281DRAFT_04472at 200.746 kb on - strand, within H281DRAFT_04472at 200.859 kb on + strand, within H281DRAFT_04472at 200.859 kb on + strand, within H281DRAFT_04472

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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197,482 + H281DRAFT_04470 0.24 +0.7
197,483 - -0.3
197,706 - H281DRAFT_04470 0.52 -0.3
197,975 + H281DRAFT_04470 0.85 +1.3
198,568 - H281DRAFT_04471 0.23 +0.3
198,568 - H281DRAFT_04471 0.23 -0.1
198,607 - H281DRAFT_04471 0.25 +0.3
198,607 - H281DRAFT_04471 0.25 +0.3
198,607 - H281DRAFT_04471 0.25 -0.2
198,607 - H281DRAFT_04471 0.25 -0.0
198,607 - H281DRAFT_04471 0.25 -0.7
198,636 + H281DRAFT_04471 0.27 +2.0
198,636 + H281DRAFT_04471 0.27 +1.5
198,637 - +0.9
198,640 + -0.8
198,641 - H281DRAFT_04471 0.27 -0.5
198,641 - H281DRAFT_04471 0.27 +1.3
198,646 + H281DRAFT_04471 0.27 +0.8
198,873 + H281DRAFT_04471 0.39 +0.2
198,873 + H281DRAFT_04471 0.39 -0.1
198,873 + H281DRAFT_04471 0.39 +1.8
198,874 - H281DRAFT_04471 0.39 +1.8
199,113 + H281DRAFT_04471 0.52 -2.1
199,114 - H281DRAFT_04471 0.52 +1.3
199,158 + H281DRAFT_04471 0.54 +3.1
199,159 - H281DRAFT_04471 0.54 -0.5
199,159 - H281DRAFT_04471 0.54 +0.5
199,159 - H281DRAFT_04471 0.54 +0.7
199,162 + H281DRAFT_04471 0.54 +2.3
199,162 + H281DRAFT_04471 0.54 -0.0
199,314 + H281DRAFT_04471 0.62 -0.3
199,324 - H281DRAFT_04471 0.63 +0.5
199,324 - H281DRAFT_04471 0.63 +0.9
199,407 + H281DRAFT_04471 0.67 +0.1
199,407 + +1.5
199,408 - H281DRAFT_04471 0.67 -0.7
199,773 + H281DRAFT_04471 0.86 +1.1
199,812 + H281DRAFT_04471 0.88 -0.5
199,812 + H281DRAFT_04471 0.88 -0.2
199,812 + H281DRAFT_04471 0.88 +0.2
199,812 + H281DRAFT_04471 0.88 +0.2
199,813 - H281DRAFT_04471 0.88 -0.6
199,813 - H281DRAFT_04471 0.88 -0.1
199,813 - H281DRAFT_04471 0.88 +0.7
199,813 - H281DRAFT_04471 0.88 +0.8
199,814 + H281DRAFT_04471 0.89 +0.3
199,814 + H281DRAFT_04471 0.89 +0.2
200,131 + +0.6
200,131 + +0.6
200,131 + -0.1
200,132 - +1.0
200,132 - +1.4
200,132 - +0.0
200,137 - +1.5
200,316 + -0.1
200,316 + +0.5
200,317 - -0.3
200,317 - -0.7
200,322 + +0.0
200,322 + +1.0
200,322 + +0.9
200,323 - +0.2
200,323 - -0.0
200,584 - H281DRAFT_04472 0.27 -0.1
200,718 + H281DRAFT_04472 0.38 -0.4
200,718 + H281DRAFT_04472 0.38 +1.2
200,740 - H281DRAFT_04472 0.39 +1.0
200,740 - H281DRAFT_04472 0.39 -1.6
200,745 + H281DRAFT_04472 0.40 +0.2
200,746 - H281DRAFT_04472 0.40 +0.7
200,746 - H281DRAFT_04472 0.40 -0.2
200,859 + H281DRAFT_04472 0.49 +0.9
200,859 + H281DRAFT_04472 0.49 +1.5

Or see this region's nucleotide sequence