Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04431

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04429 and H281DRAFT_04430 overlap by 115 nucleotidesH281DRAFT_04430 and H281DRAFT_04431 are separated by 195 nucleotidesH281DRAFT_04431 and H281DRAFT_04432 are separated by 175 nucleotides H281DRAFT_04429: H281DRAFT_04429 - hypothetical protein, at 147,454 to 147,714 _04429 H281DRAFT_04430: H281DRAFT_04430 - hypothetical protein, at 147,600 to 147,926 _04430 H281DRAFT_04431: H281DRAFT_04431 - Membrane-bound metallopeptidase, at 148,122 to 148,838 _04431 H281DRAFT_04432: H281DRAFT_04432 - Galactose mutarotase, at 149,014 to 149,922 _04432 Position (kb) 148 149Strain fitness (log2 ratio) -2 -1 0 1 2 3at 147.406 kb on + strandat 147.406 kb on + strandat 147.426 kb on + strandat 147.434 kb on + strandat 147.448 kb on + strandat 147.449 kb on - strandat 147.449 kb on - strandat 147.470 kb on + strandat 147.470 kb on + strandat 147.471 kb on - strandat 147.601 kb on + strandat 147.609 kb on - strandat 147.609 kb on - strandat 147.718 kb on + strand, within H281DRAFT_04430at 147.719 kb on - strand, within H281DRAFT_04430at 147.719 kb on - strand, within H281DRAFT_04430at 147.824 kb on - strand, within H281DRAFT_04430at 147.824 kb on - strand, within H281DRAFT_04430at 147.939 kb on + strandat 147.939 kb on + strandat 147.992 kb on + strandat 147.992 kb on + strandat 147.992 kb on + strandat 147.992 kb on + strandat 147.994 kb on + strandat 147.995 kb on - strandat 148.024 kb on + strandat 148.100 kb on + strandat 148.100 kb on + strandat 148.101 kb on - strandat 148.123 kb on + strandat 148.297 kb on + strand, within H281DRAFT_04431at 148.623 kb on + strand, within H281DRAFT_04431at 148.624 kb on - strand, within H281DRAFT_04431at 148.624 kb on - strand, within H281DRAFT_04431at 148.700 kb on + strand, within H281DRAFT_04431at 148.700 kb on + strand, within H281DRAFT_04431at 148.700 kb on + strandat 148.818 kb on - strandat 148.888 kb on - strandat 148.891 kb on + strandat 148.891 kb on + strandat 148.891 kb on + strandat 148.892 kb on - strandat 148.892 kb on - strandat 148.892 kb on - strandat 149.016 kb on - strandat 149.016 kb on - strandat 149.094 kb on + strandat 149.135 kb on + strand, within H281DRAFT_04432at 149.135 kb on + strand, within H281DRAFT_04432at 149.135 kb on + strand, within H281DRAFT_04432at 149.136 kb on - strandat 149.136 kb on - strand, within H281DRAFT_04432at 149.248 kb on + strand, within H281DRAFT_04432at 149.248 kb on + strand, within H281DRAFT_04432at 149.249 kb on - strandat 149.249 kb on - strand, within H281DRAFT_04432at 149.249 kb on - strand, within H281DRAFT_04432at 149.316 kb on - strand, within H281DRAFT_04432at 149.432 kb on + strand, within H281DRAFT_04432at 149.432 kb on + strand, within H281DRAFT_04432at 149.433 kb on - strand, within H281DRAFT_04432at 149.453 kb on + strand, within H281DRAFT_04432at 149.454 kb on - strand, within H281DRAFT_04432at 149.454 kb on - strand, within H281DRAFT_04432

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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147,406 + +0.7
147,406 + +1.2
147,426 + +1.6
147,434 + -0.7
147,448 + +0.3
147,449 - -0.1
147,449 - -0.7
147,470 + +1.1
147,470 + -1.0
147,471 - -0.6
147,601 + +0.5
147,609 - +0.7
147,609 - +1.5
147,718 + H281DRAFT_04430 0.36 -1.2
147,719 - H281DRAFT_04430 0.36 -0.8
147,719 - H281DRAFT_04430 0.36 -0.1
147,824 - H281DRAFT_04430 0.69 -0.8
147,824 - H281DRAFT_04430 0.69 +0.2
147,939 + -0.3
147,939 + -0.5
147,992 + -0.0
147,992 + -1.7
147,992 + +1.2
147,992 + -0.0
147,994 + -0.9
147,995 - +1.9
148,024 + +1.9
148,100 + +0.4
148,100 + -0.3
148,101 - +1.0
148,123 + -0.5
148,297 + H281DRAFT_04431 0.24 +0.1
148,623 + H281DRAFT_04431 0.70 +0.6
148,624 - H281DRAFT_04431 0.70 +0.5
148,624 - H281DRAFT_04431 0.70 +0.7
148,700 + H281DRAFT_04431 0.81 -0.0
148,700 + H281DRAFT_04431 0.81 -0.2
148,700 + +0.5
148,818 - +0.1
148,888 - -0.3
148,891 + +0.6
148,891 + +0.3
148,891 + +0.3
148,892 - -0.8
148,892 - -0.9
148,892 - -0.3
149,016 - -0.8
149,016 - +1.3
149,094 + -0.3
149,135 + H281DRAFT_04432 0.13 +0.5
149,135 + H281DRAFT_04432 0.13 +0.1
149,135 + H281DRAFT_04432 0.13 +0.0
149,136 - -0.1
149,136 - H281DRAFT_04432 0.13 +3.5
149,248 + H281DRAFT_04432 0.26 +2.1
149,248 + H281DRAFT_04432 0.26 -0.6
149,249 - -0.1
149,249 - H281DRAFT_04432 0.26 +0.5
149,249 - H281DRAFT_04432 0.26 -0.1
149,316 - H281DRAFT_04432 0.33 -0.6
149,432 + H281DRAFT_04432 0.46 +0.4
149,432 + H281DRAFT_04432 0.46 -0.2
149,433 - H281DRAFT_04432 0.46 +0.4
149,453 + H281DRAFT_04432 0.48 +0.7
149,454 - H281DRAFT_04432 0.48 +0.3
149,454 - H281DRAFT_04432 0.48 -2.4

Or see this region's nucleotide sequence