Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04365

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04363 and H281DRAFT_04364 overlap by 14 nucleotidesH281DRAFT_04364 and H281DRAFT_04365 overlap by 4 nucleotidesH281DRAFT_04365 and H281DRAFT_04366 are separated by 20 nucleotidesH281DRAFT_04366 and H281DRAFT_04367 are separated by 85 nucleotides H281DRAFT_04363: H281DRAFT_04363 - GTP-binding protein Era, at 80,713 to 81,576 _04363 H281DRAFT_04364: H281DRAFT_04364 - DNA replication and repair protein RecO, at 81,563 to 82,480 _04364 H281DRAFT_04365: H281DRAFT_04365 - pyridoxine 5'-phosphate synthase, at 82,477 to 83,241 _04365 H281DRAFT_04366: H281DRAFT_04366 - holo-[acyl-carrier protein] synthase, at 83,262 to 83,687 _04366 H281DRAFT_04367: H281DRAFT_04367 - beta-N-acetylhexosaminidase, at 83,773 to 84,801 _04367 Position (kb) 82 83 84Strain fitness (log2 ratio) -2 -1 0 1 2at 81.562 kb on + strandat 81.688 kb on + strand, within H281DRAFT_04364at 81.805 kb on + strand, within H281DRAFT_04364at 81.805 kb on + strand, within H281DRAFT_04364at 81.810 kb on - strand, within H281DRAFT_04364at 81.969 kb on + strand, within H281DRAFT_04364at 81.973 kb on + strand, within H281DRAFT_04364at 81.974 kb on - strand, within H281DRAFT_04364at 82.109 kb on + strand, within H281DRAFT_04364at 82.109 kb on + strand, within H281DRAFT_04364at 82.109 kb on + strand, within H281DRAFT_04364at 82.109 kb on + strand, within H281DRAFT_04364at 82.110 kb on - strand, within H281DRAFT_04364at 82.110 kb on - strand, within H281DRAFT_04364at 82.110 kb on - strand, within H281DRAFT_04364at 82.110 kb on - strand, within H281DRAFT_04364at 82.257 kb on - strand, within H281DRAFT_04364at 82.362 kb on - strand, within H281DRAFT_04364at 82.362 kb on - strand, within H281DRAFT_04364at 82.362 kb on - strand, within H281DRAFT_04364at 82.362 kb on - strand, within H281DRAFT_04364at 82.421 kb on + strandat 82.476 kb on + strandat 83.706 kb on + strandat 83.707 kb on - strandat 83.707 kb on - strandat 83.891 kb on - strand, within H281DRAFT_04367at 84.060 kb on + strand, within H281DRAFT_04367at 84.061 kb on - strand, within H281DRAFT_04367at 84.094 kb on + strand, within H281DRAFT_04367at 84.095 kb on - strand, within H281DRAFT_04367at 84.095 kb on - strand, within H281DRAFT_04367at 84.095 kb on - strand, within H281DRAFT_04367at 84.095 kb on - strand, within H281DRAFT_04367at 84.095 kb on - strand, within H281DRAFT_04367at 84.095 kb on - strand, within H281DRAFT_04367at 84.096 kb on + strand, within H281DRAFT_04367at 84.164 kb on - strand, within H281DRAFT_04367at 84.179 kb on + strand, within H281DRAFT_04367at 84.180 kb on - strand, within H281DRAFT_04367

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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81,562 + -1.3
81,688 + H281DRAFT_04364 0.14 -0.6
81,805 + H281DRAFT_04364 0.26 -0.8
81,805 + H281DRAFT_04364 0.26 +0.3
81,810 - H281DRAFT_04364 0.27 -0.5
81,969 + H281DRAFT_04364 0.44 -0.8
81,973 + H281DRAFT_04364 0.45 +0.5
81,974 - H281DRAFT_04364 0.45 -1.2
82,109 + H281DRAFT_04364 0.59 +2.3
82,109 + H281DRAFT_04364 0.59 +0.5
82,109 + H281DRAFT_04364 0.59 +0.2
82,109 + H281DRAFT_04364 0.59 -0.4
82,110 - H281DRAFT_04364 0.60 -1.6
82,110 - H281DRAFT_04364 0.60 -2.6
82,110 - H281DRAFT_04364 0.60 -0.6
82,110 - H281DRAFT_04364 0.60 +0.3
82,257 - H281DRAFT_04364 0.76 -0.2
82,362 - H281DRAFT_04364 0.87 -0.6
82,362 - H281DRAFT_04364 0.87 -0.7
82,362 - H281DRAFT_04364 0.87 -1.1
82,362 - H281DRAFT_04364 0.87 -0.6
82,421 + +0.9
82,476 + +0.4
83,706 + +1.4
83,707 - -1.0
83,707 - -1.0
83,891 - H281DRAFT_04367 0.11 +0.9
84,060 + H281DRAFT_04367 0.28 -0.5
84,061 - H281DRAFT_04367 0.28 -0.4
84,094 + H281DRAFT_04367 0.31 -0.0
84,095 - H281DRAFT_04367 0.31 +0.1
84,095 - H281DRAFT_04367 0.31 -1.6
84,095 - H281DRAFT_04367 0.31 +1.0
84,095 - H281DRAFT_04367 0.31 -0.8
84,095 - H281DRAFT_04367 0.31 -0.3
84,095 - H281DRAFT_04367 0.31 -0.1
84,096 + H281DRAFT_04367 0.31 +0.8
84,164 - H281DRAFT_04367 0.38 -0.1
84,179 + H281DRAFT_04367 0.39 +0.7
84,180 - H281DRAFT_04367 0.40 -0.3

Or see this region's nucleotide sequence