Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04315

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04314 and H281DRAFT_04315 are separated by 15 nucleotidesH281DRAFT_04315 and H281DRAFT_04316 are separated by 157 nucleotides H281DRAFT_04314: H281DRAFT_04314 - fumarase, class II, at 30,617 to 32,017 _04314 H281DRAFT_04315: H281DRAFT_04315 - Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase, at 32,033 to 33,682 _04315 H281DRAFT_04316: H281DRAFT_04316 - bile acid:Na+ symporter, BASS family, at 33,840 to 34,799 _04316 Position (kb) 32 33 34Strain fitness (log2 ratio) -1 0 1 2at 31.214 kb on + strand, within H281DRAFT_04314at 31.215 kb on - strand, within H281DRAFT_04314at 31.215 kb on - strand, within H281DRAFT_04314at 31.347 kb on + strand, within H281DRAFT_04314at 31.348 kb on - strand, within H281DRAFT_04314at 31.348 kb on - strand, within H281DRAFT_04314at 31.348 kb on - strand, within H281DRAFT_04314at 31.405 kb on - strand, within H281DRAFT_04314at 31.988 kb on - strandat 31.988 kb on - strandat 32.034 kb on + strandat 32.034 kb on + strandat 32.035 kb on - strandat 32.066 kb on + strandat 32.066 kb on + strandat 32.067 kb on - strandat 32.067 kb on - strandat 32.088 kb on + strandat 32.088 kb on + strandat 32.089 kb on - strandat 32.091 kb on - strandat 32.116 kb on - strandat 32.116 kb on - strandat 32.223 kb on + strand, within H281DRAFT_04315at 32.379 kb on + strandat 32.380 kb on - strand, within H281DRAFT_04315at 32.380 kb on - strand, within H281DRAFT_04315at 32.460 kb on + strand, within H281DRAFT_04315at 32.462 kb on + strand, within H281DRAFT_04315at 32.505 kb on + strand, within H281DRAFT_04315at 32.625 kb on + strand, within H281DRAFT_04315at 32.625 kb on + strand, within H281DRAFT_04315at 32.626 kb on - strand, within H281DRAFT_04315at 32.806 kb on + strand, within H281DRAFT_04315at 32.807 kb on - strand, within H281DRAFT_04315at 33.042 kb on + strand, within H281DRAFT_04315at 33.151 kb on + strand, within H281DRAFT_04315at 33.151 kb on + strand, within H281DRAFT_04315at 33.151 kb on + strand, within H281DRAFT_04315at 33.152 kb on - strand, within H281DRAFT_04315at 33.310 kb on - strand, within H281DRAFT_04315at 33.360 kb on + strand, within H281DRAFT_04315at 33.360 kb on + strand, within H281DRAFT_04315at 33.360 kb on + strand, within H281DRAFT_04315at 33.360 kb on + strand, within H281DRAFT_04315at 33.361 kb on - strand, within H281DRAFT_04315at 33.363 kb on + strand, within H281DRAFT_04315at 33.363 kb on + strand, within H281DRAFT_04315at 33.364 kb on - strand, within H281DRAFT_04315at 33.364 kb on - strand, within H281DRAFT_04315at 33.640 kb on + strandat 33.641 kb on - strandat 33.759 kb on + strandat 33.759 kb on + strandat 33.760 kb on - strandat 33.880 kb on + strandat 33.881 kb on - strandat 33.991 kb on + strand, within H281DRAFT_04316at 33.992 kb on - strand, within H281DRAFT_04316at 33.992 kb on - strand, within H281DRAFT_04316at 34.077 kb on + strand, within H281DRAFT_04316at 34.078 kb on - strand, within H281DRAFT_04316at 34.078 kb on - strand, within H281DRAFT_04316at 34.078 kb on - strand, within H281DRAFT_04316at 34.370 kb on - strand, within H281DRAFT_04316at 34.379 kb on + strand, within H281DRAFT_04316at 34.380 kb on - strand, within H281DRAFT_04316at 34.380 kb on - strand, within H281DRAFT_04316at 34.462 kb on + strand, within H281DRAFT_04316at 34.463 kb on - strand, within H281DRAFT_04316at 34.463 kb on - strand, within H281DRAFT_04316at 34.585 kb on + strand, within H281DRAFT_04316at 34.586 kb on - strand, within H281DRAFT_04316

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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31,214 + H281DRAFT_04314 0.43 -0.8
31,215 - H281DRAFT_04314 0.43 +0.5
31,215 - H281DRAFT_04314 0.43 +0.0
31,347 + H281DRAFT_04314 0.52 +0.2
31,348 - H281DRAFT_04314 0.52 -0.4
31,348 - H281DRAFT_04314 0.52 -1.6
31,348 - H281DRAFT_04314 0.52 -0.0
31,405 - H281DRAFT_04314 0.56 +0.4
31,988 - -0.4
31,988 - +0.2
32,034 + -0.4
32,034 + +0.6
32,035 - -0.5
32,066 + +0.4
32,066 + -0.6
32,067 - +0.6
32,067 - +2.5
32,088 + +0.7
32,088 + -1.4
32,089 - -0.2
32,091 - +0.3
32,116 - -0.3
32,116 - +0.7
32,223 + H281DRAFT_04315 0.12 +0.3
32,379 + -0.1
32,380 - H281DRAFT_04315 0.21 +1.0
32,380 - H281DRAFT_04315 0.21 +1.1
32,460 + H281DRAFT_04315 0.26 +0.6
32,462 + H281DRAFT_04315 0.26 +0.5
32,505 + H281DRAFT_04315 0.29 -0.6
32,625 + H281DRAFT_04315 0.36 -0.1
32,625 + H281DRAFT_04315 0.36 +1.7
32,626 - H281DRAFT_04315 0.36 +0.4
32,806 + H281DRAFT_04315 0.47 +0.5
32,807 - H281DRAFT_04315 0.47 +0.2
33,042 + H281DRAFT_04315 0.61 +0.4
33,151 + H281DRAFT_04315 0.68 -1.5
33,151 + H281DRAFT_04315 0.68 -0.2
33,151 + H281DRAFT_04315 0.68 +0.7
33,152 - H281DRAFT_04315 0.68 +0.5
33,310 - H281DRAFT_04315 0.77 -0.1
33,360 + H281DRAFT_04315 0.80 +0.3
33,360 + H281DRAFT_04315 0.80 +0.8
33,360 + H281DRAFT_04315 0.80 -0.4
33,360 + H281DRAFT_04315 0.80 +0.7
33,361 - H281DRAFT_04315 0.80 +0.9
33,363 + H281DRAFT_04315 0.81 +2.0
33,363 + H281DRAFT_04315 0.81 -0.8
33,364 - H281DRAFT_04315 0.81 -0.2
33,364 - H281DRAFT_04315 0.81 -0.3
33,640 + -0.4
33,641 - +0.3
33,759 + -0.3
33,759 + +0.8
33,760 - -1.2
33,880 + -0.6
33,881 - +0.1
33,991 + H281DRAFT_04316 0.16 +0.8
33,992 - H281DRAFT_04316 0.16 +0.7
33,992 - H281DRAFT_04316 0.16 +0.4
34,077 + H281DRAFT_04316 0.25 +0.4
34,078 - H281DRAFT_04316 0.25 -0.1
34,078 - H281DRAFT_04316 0.25 -0.4
34,078 - H281DRAFT_04316 0.25 -0.5
34,370 - H281DRAFT_04316 0.55 -0.2
34,379 + H281DRAFT_04316 0.56 +0.8
34,380 - H281DRAFT_04316 0.56 -1.2
34,380 - H281DRAFT_04316 0.56 -0.8
34,462 + H281DRAFT_04316 0.65 +0.2
34,463 - H281DRAFT_04316 0.65 +0.3
34,463 - H281DRAFT_04316 0.65 -0.4
34,585 + H281DRAFT_04316 0.78 -0.1
34,586 - H281DRAFT_04316 0.78 -0.1

Or see this region's nucleotide sequence