Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04292

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04291 and H281DRAFT_04292 are separated by 172 nucleotidesH281DRAFT_04292 and H281DRAFT_04293 are separated by 120 nucleotidesH281DRAFT_04293 and H281DRAFT_04294 are separated by 38 nucleotides H281DRAFT_04291: H281DRAFT_04291 - hypothetical protein, at 7,171 to 8,340 _04291 H281DRAFT_04292: H281DRAFT_04292 - SSU ribosomal protein S16P, at 8,513 to 8,767 _04292 H281DRAFT_04293: H281DRAFT_04293 - 16S rRNA processing protein RimM, at 8,888 to 9,646 _04293 H281DRAFT_04294: H281DRAFT_04294 - tRNA (Guanine37-N(1)-) methyltransferase, at 9,685 to 10,452 _04294 Position (kb) 8 9Strain fitness (log2 ratio) -2 -1 0 1 2at 7.568 kb on + strand, within H281DRAFT_04291at 7.666 kb on + strandat 7.666 kb on + strand, within H281DRAFT_04291at 7.666 kb on + strand, within H281DRAFT_04291at 7.666 kb on + strand, within H281DRAFT_04291at 7.667 kb on - strand, within H281DRAFT_04291at 7.667 kb on - strand, within H281DRAFT_04291at 7.667 kb on - strand, within H281DRAFT_04291at 7.711 kb on + strand, within H281DRAFT_04291at 7.711 kb on + strand, within H281DRAFT_04291at 7.711 kb on + strand, within H281DRAFT_04291at 7.711 kb on + strand, within H281DRAFT_04291at 7.712 kb on - strand, within H281DRAFT_04291at 7.712 kb on - strand, within H281DRAFT_04291at 7.712 kb on - strand, within H281DRAFT_04291at 7.800 kb on + strand, within H281DRAFT_04291at 7.800 kb on + strand, within H281DRAFT_04291at 7.823 kb on + strand, within H281DRAFT_04291at 7.823 kb on + strand, within H281DRAFT_04291at 7.824 kb on - strand, within H281DRAFT_04291at 7.824 kb on - strand, within H281DRAFT_04291at 7.897 kb on + strand, within H281DRAFT_04291at 7.897 kb on + strand, within H281DRAFT_04291at 7.898 kb on - strand, within H281DRAFT_04291at 7.921 kb on - strand, within H281DRAFT_04291at 7.921 kb on - strand, within H281DRAFT_04291at 7.948 kb on + strand, within H281DRAFT_04291at 7.973 kb on + strand, within H281DRAFT_04291at 8.095 kb on + strand, within H281DRAFT_04291at 8.095 kb on + strand, within H281DRAFT_04291at 8.095 kb on + strand, within H281DRAFT_04291at 8.095 kb on + strand, within H281DRAFT_04291at 8.096 kb on - strand, within H281DRAFT_04291at 8.096 kb on - strand, within H281DRAFT_04291at 8.096 kb on - strand, within H281DRAFT_04291at 8.096 kb on - strand, within H281DRAFT_04291at 8.097 kb on + strand, within H281DRAFT_04291at 8.097 kb on + strand, within H281DRAFT_04291at 8.097 kb on + strand, within H281DRAFT_04291at 8.097 kb on + strand, within H281DRAFT_04291at 8.097 kb on + strand, within H281DRAFT_04291at 8.097 kb on + strand, within H281DRAFT_04291at 8.098 kb on - strand, within H281DRAFT_04291at 8.098 kb on - strand, within H281DRAFT_04291at 8.098 kb on - strand, within H281DRAFT_04291at 8.098 kb on - strand, within H281DRAFT_04291at 8.098 kb on - strand, within H281DRAFT_04291at 8.099 kb on + strand, within H281DRAFT_04291at 8.099 kb on + strand, within H281DRAFT_04291at 8.099 kb on + strand, within H281DRAFT_04291at 8.099 kb on + strand, within H281DRAFT_04291at 8.099 kb on + strand, within H281DRAFT_04291at 8.099 kb on + strand, within H281DRAFT_04291at 8.099 kb on + strand, within H281DRAFT_04291at 8.099 kb on + strand, within H281DRAFT_04291at 8.099 kb on + strand, within H281DRAFT_04291at 8.099 kb on + strand, within H281DRAFT_04291at 8.099 kb on + strand, within H281DRAFT_04291at 8.099 kb on + strand, within H281DRAFT_04291at 8.099 kb on + strand, within H281DRAFT_04291at 8.099 kb on + strand, within H281DRAFT_04291at 8.100 kb on - strand, within H281DRAFT_04291at 8.100 kb on - strand, within H281DRAFT_04291at 8.100 kb on - strand, within H281DRAFT_04291at 8.100 kb on - strand, within H281DRAFT_04291at 8.100 kb on - strand, within H281DRAFT_04291at 8.100 kb on - strand, within H281DRAFT_04291at 8.101 kb on + strand, within H281DRAFT_04291at 8.101 kb on + strand, within H281DRAFT_04291at 8.101 kb on + strand, within H281DRAFT_04291at 8.101 kb on + strand, within H281DRAFT_04291at 8.102 kb on - strand, within H281DRAFT_04291at 8.102 kb on - strand, within H281DRAFT_04291at 8.102 kb on - strand, within H281DRAFT_04291at 8.303 kb on + strandat 8.311 kb on + strandat 9.641 kb on + strandat 9.647 kb on + strandat 9.647 kb on + strandat 9.647 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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7,568 + H281DRAFT_04291 0.34 +0.6
7,666 + +1.5
7,666 + H281DRAFT_04291 0.42 -1.3
7,666 + H281DRAFT_04291 0.42 +0.1
7,666 + H281DRAFT_04291 0.42 -0.0
7,667 - H281DRAFT_04291 0.42 +1.3
7,667 - H281DRAFT_04291 0.42 +0.1
7,667 - H281DRAFT_04291 0.42 -0.1
7,711 + H281DRAFT_04291 0.46 +0.5
7,711 + H281DRAFT_04291 0.46 +1.1
7,711 + H281DRAFT_04291 0.46 +0.7
7,711 + H281DRAFT_04291 0.46 -0.3
7,712 - H281DRAFT_04291 0.46 +1.1
7,712 - H281DRAFT_04291 0.46 -0.3
7,712 - H281DRAFT_04291 0.46 +0.9
7,800 + H281DRAFT_04291 0.54 +0.9
7,800 + H281DRAFT_04291 0.54 +0.3
7,823 + H281DRAFT_04291 0.56 +0.5
7,823 + H281DRAFT_04291 0.56 +1.6
7,824 - H281DRAFT_04291 0.56 +1.0
7,824 - H281DRAFT_04291 0.56 -0.7
7,897 + H281DRAFT_04291 0.62 +0.1
7,897 + H281DRAFT_04291 0.62 -1.4
7,898 - H281DRAFT_04291 0.62 +0.5
7,921 - H281DRAFT_04291 0.64 -0.3
7,921 - H281DRAFT_04291 0.64 +1.1
7,948 + H281DRAFT_04291 0.66 +0.5
7,973 + H281DRAFT_04291 0.69 -0.9
8,095 + H281DRAFT_04291 0.79 +0.0
8,095 + H281DRAFT_04291 0.79 +0.3
8,095 + H281DRAFT_04291 0.79 +0.3
8,095 + H281DRAFT_04291 0.79 +0.0
8,096 - H281DRAFT_04291 0.79 -0.9
8,096 - H281DRAFT_04291 0.79 -1.3
8,096 - H281DRAFT_04291 0.79 -2.4
8,096 - H281DRAFT_04291 0.79 -0.1
8,097 + H281DRAFT_04291 0.79 +0.1
8,097 + H281DRAFT_04291 0.79 +0.2
8,097 + H281DRAFT_04291 0.79 -0.4
8,097 + H281DRAFT_04291 0.79 +0.2
8,097 + H281DRAFT_04291 0.79 +0.1
8,097 + H281DRAFT_04291 0.79 +0.9
8,098 - H281DRAFT_04291 0.79 -1.2
8,098 - H281DRAFT_04291 0.79 +0.3
8,098 - H281DRAFT_04291 0.79 +0.4
8,098 - H281DRAFT_04291 0.79 +0.7
8,098 - H281DRAFT_04291 0.79 -0.5
8,099 + H281DRAFT_04291 0.79 +0.1
8,099 + H281DRAFT_04291 0.79 +0.4
8,099 + H281DRAFT_04291 0.79 -0.9
8,099 + H281DRAFT_04291 0.79 -0.4
8,099 + H281DRAFT_04291 0.79 +0.5
8,099 + H281DRAFT_04291 0.79 -0.4
8,099 + H281DRAFT_04291 0.79 +0.3
8,099 + H281DRAFT_04291 0.79 +0.8
8,099 + H281DRAFT_04291 0.79 +0.8
8,099 + H281DRAFT_04291 0.79 +0.5
8,099 + H281DRAFT_04291 0.79 +1.1
8,099 + H281DRAFT_04291 0.79 -0.4
8,099 + H281DRAFT_04291 0.79 -0.4
8,099 + H281DRAFT_04291 0.79 +0.4
8,100 - H281DRAFT_04291 0.79 -0.8
8,100 - H281DRAFT_04291 0.79 -0.2
8,100 - H281DRAFT_04291 0.79 +0.3
8,100 - H281DRAFT_04291 0.79 -1.5
8,100 - H281DRAFT_04291 0.79 -1.0
8,100 - H281DRAFT_04291 0.79 -0.7
8,101 + H281DRAFT_04291 0.79 -0.3
8,101 + H281DRAFT_04291 0.79 -0.1
8,101 + H281DRAFT_04291 0.79 -0.4
8,101 + H281DRAFT_04291 0.79 +0.3
8,102 - H281DRAFT_04291 0.80 -0.5
8,102 - H281DRAFT_04291 0.80 -0.6
8,102 - H281DRAFT_04291 0.80 -0.6
8,303 + -0.9
8,311 + -0.6
9,641 + +2.1
9,647 + -0.4
9,647 + -0.6
9,647 + +1.0

Or see this region's nucleotide sequence