Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04173 and H281DRAFT_04174 are separated by 177 nucleotides H281DRAFT_04174 and H281DRAFT_04175 are separated by 237 nucleotides
H281DRAFT_04173: H281DRAFT_04173 - Nicotinamidase-related amidase, at 290,209 to 290,835
_04173
H281DRAFT_04174: H281DRAFT_04174 - Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain, at 291,013 to 292,020
_04174
H281DRAFT_04175: H281DRAFT_04175 - Carbon monoxide dehydrogenase subunit G, at 292,258 to 292,992
_04175
Position (kb) 291
292
293 Strain fitness (log2 ratio) -1
0
1
2 at 290.020 kb on - strand at 290.020 kb on - strand at 290.020 kb on - strand at 290.263 kb on + strand at 290.278 kb on - strand, within H281DRAFT_04173 at 290.347 kb on + strand, within H281DRAFT_04173 at 290.347 kb on + strand, within H281DRAFT_04173 at 290.478 kb on + strand, within H281DRAFT_04173 at 290.489 kb on + strand, within H281DRAFT_04173 at 290.489 kb on + strand, within H281DRAFT_04173 at 290.490 kb on - strand, within H281DRAFT_04173 at 290.582 kb on + strand, within H281DRAFT_04173 at 290.582 kb on + strand, within H281DRAFT_04173 at 290.582 kb on + strand, within H281DRAFT_04173 at 290.583 kb on - strand, within H281DRAFT_04173 at 290.583 kb on - strand, within H281DRAFT_04173 at 290.583 kb on - strand, within H281DRAFT_04173 at 290.782 kb on + strand at 290.786 kb on + strand at 290.786 kb on + strand at 290.787 kb on - strand at 290.998 kb on + strand at 290.998 kb on + strand at 290.999 kb on - strand at 291.018 kb on + strand at 291.019 kb on - strand at 291.019 kb on - strand at 291.291 kb on + strand, within H281DRAFT_04174 at 291.292 kb on - strand, within H281DRAFT_04174 at 291.380 kb on + strand, within H281DRAFT_04174 at 291.508 kb on + strand, within H281DRAFT_04174 at 291.508 kb on + strand, within H281DRAFT_04174 at 291.509 kb on - strand, within H281DRAFT_04174 at 291.509 kb on - strand, within H281DRAFT_04174 at 291.509 kb on - strand, within H281DRAFT_04174 at 291.509 kb on - strand, within H281DRAFT_04174 at 291.569 kb on + strand, within H281DRAFT_04174 at 291.569 kb on + strand, within H281DRAFT_04174 at 291.570 kb on - strand, within H281DRAFT_04174 at 291.664 kb on + strand, within H281DRAFT_04174 at 291.664 kb on + strand, within H281DRAFT_04174 at 291.664 kb on + strand, within H281DRAFT_04174 at 291.664 kb on + strand, within H281DRAFT_04174 at 291.664 kb on + strand, within H281DRAFT_04174 at 291.665 kb on - strand, within H281DRAFT_04174 at 291.665 kb on - strand, within H281DRAFT_04174 at 291.665 kb on - strand, within H281DRAFT_04174 at 291.665 kb on - strand, within H281DRAFT_04174 at 291.665 kb on - strand, within H281DRAFT_04174 at 291.665 kb on - strand, within H281DRAFT_04174 at 291.665 kb on - strand, within H281DRAFT_04174 at 292.060 kb on - strand at 292.172 kb on + strand at 292.199 kb on + strand at 292.287 kb on - strand at 292.287 kb on - strand at 292.287 kb on - strand at 292.287 kb on - strand at 292.287 kb on - strand at 292.465 kb on + strand, within H281DRAFT_04175 at 292.466 kb on - strand, within H281DRAFT_04175 at 292.466 kb on - strand, within H281DRAFT_04175 at 292.466 kb on - strand, within H281DRAFT_04175 at 292.851 kb on + strand, within H281DRAFT_04175
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 290,020 - -0.8 290,020 - +0.2 290,020 - -0.7 290,263 + -0.4 290,278 - H281DRAFT_04173 0.11 +0.9 290,347 + H281DRAFT_04173 0.22 -0.7 290,347 + H281DRAFT_04173 0.22 +0.2 290,478 + H281DRAFT_04173 0.43 -1.5 290,489 + H281DRAFT_04173 0.45 -0.2 290,489 + H281DRAFT_04173 0.45 +0.3 290,490 - H281DRAFT_04173 0.45 +1.6 290,582 + H281DRAFT_04173 0.59 -0.1 290,582 + H281DRAFT_04173 0.59 +0.1 290,582 + H281DRAFT_04173 0.59 -0.0 290,583 - H281DRAFT_04173 0.60 +0.2 290,583 - H281DRAFT_04173 0.60 -0.6 290,583 - H281DRAFT_04173 0.60 +0.4 290,782 + +0.9 290,786 + -0.4 290,786 + +0.0 290,787 - -0.2 290,998 + +0.6 290,998 + +0.1 290,999 - +0.0 291,018 + -0.7 291,019 - -1.1 291,019 - +0.1 291,291 + H281DRAFT_04174 0.28 +1.0 291,292 - H281DRAFT_04174 0.28 +0.5 291,380 + H281DRAFT_04174 0.36 -0.8 291,508 + H281DRAFT_04174 0.49 +0.6 291,508 + H281DRAFT_04174 0.49 -0.8 291,509 - H281DRAFT_04174 0.49 -1.0 291,509 - H281DRAFT_04174 0.49 -0.1 291,509 - H281DRAFT_04174 0.49 -1.1 291,509 - H281DRAFT_04174 0.49 +2.3 291,569 + H281DRAFT_04174 0.55 -1.7 291,569 + H281DRAFT_04174 0.55 -0.9 291,570 - H281DRAFT_04174 0.55 +0.1 291,664 + H281DRAFT_04174 0.65 +1.0 291,664 + H281DRAFT_04174 0.65 +0.3 291,664 + H281DRAFT_04174 0.65 +0.1 291,664 + H281DRAFT_04174 0.65 +0.6 291,664 + H281DRAFT_04174 0.65 -0.5 291,665 - H281DRAFT_04174 0.65 +0.8 291,665 - H281DRAFT_04174 0.65 -0.7 291,665 - H281DRAFT_04174 0.65 -0.5 291,665 - H281DRAFT_04174 0.65 +0.9 291,665 - H281DRAFT_04174 0.65 -0.3 291,665 - H281DRAFT_04174 0.65 -0.5 291,665 - H281DRAFT_04174 0.65 -0.3 292,060 - +0.6 292,172 + +1.3 292,199 + -0.1 292,287 - +1.3 292,287 - +1.9 292,287 - -0.8 292,287 - -1.6 292,287 - +0.3 292,465 + H281DRAFT_04175 0.28 +1.2 292,466 - H281DRAFT_04175 0.28 -0.2 292,466 - H281DRAFT_04175 0.28 -0.0 292,466 - H281DRAFT_04175 0.28 -0.2 292,851 + H281DRAFT_04175 0.81 -0.3
Or see this region's nucleotide sequence