Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04120

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04119 and H281DRAFT_04120 are separated by 269 nucleotidesH281DRAFT_04120 and H281DRAFT_04121 are separated by 273 nucleotides H281DRAFT_04119: H281DRAFT_04119 - ornithine carbamoyltransferase, at 229,812 to 230,741 _04119 H281DRAFT_04120: H281DRAFT_04120 - argininosuccinate synthase, at 231,011 to 232,237 _04120 H281DRAFT_04121: H281DRAFT_04121 - UDP-N-acetylmuramate dehydrogenase, at 232,511 to 233,557 _04121 Position (kb) 231 232 233Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 230.150 kb on + strand, within H281DRAFT_04119at 230.150 kb on + strand, within H281DRAFT_04119at 230.304 kb on - strand, within H281DRAFT_04119at 230.663 kb on - strandat 230.663 kb on - strandat 230.713 kb on - strandat 230.941 kb on + strandat 230.941 kb on + strandat 231.000 kb on - strandat 231.000 kb on - strandat 231.042 kb on - strandat 231.092 kb on + strandat 231.092 kb on + strandat 231.093 kb on - strandat 231.093 kb on - strandat 231.266 kb on + strand, within H281DRAFT_04120at 231.267 kb on - strand, within H281DRAFT_04120at 231.278 kb on + strand, within H281DRAFT_04120at 231.278 kb on + strand, within H281DRAFT_04120at 231.413 kb on + strand, within H281DRAFT_04120at 231.413 kb on + strandat 231.414 kb on - strand, within H281DRAFT_04120at 231.416 kb on + strand, within H281DRAFT_04120at 231.495 kb on - strand, within H281DRAFT_04120at 231.680 kb on + strand, within H281DRAFT_04120at 231.680 kb on + strand, within H281DRAFT_04120at 231.680 kb on + strand, within H281DRAFT_04120at 231.681 kb on - strand, within H281DRAFT_04120at 231.818 kb on + strand, within H281DRAFT_04120at 231.845 kb on + strand, within H281DRAFT_04120at 231.902 kb on - strand, within H281DRAFT_04120at 231.965 kb on + strand, within H281DRAFT_04120at 232.061 kb on + strand, within H281DRAFT_04120at 232.062 kb on - strand, within H281DRAFT_04120at 232.151 kb on + strandat 232.151 kb on + strandat 232.198 kb on + strandat 232.389 kb on + strandat 232.486 kb on - strandat 232.486 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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230,150 + H281DRAFT_04119 0.36 +1.4
230,150 + H281DRAFT_04119 0.36 -3.2
230,304 - H281DRAFT_04119 0.53 -1.9
230,663 - +1.4
230,663 - -1.2
230,713 - +1.4
230,941 + +0.1
230,941 + -0.3
231,000 - -3.7
231,000 - -1.9
231,042 - -1.9
231,092 + -2.6
231,092 + -3.5
231,093 - -2.7
231,093 - -2.4
231,266 + H281DRAFT_04120 0.21 -3.5
231,267 - H281DRAFT_04120 0.21 -2.3
231,278 + H281DRAFT_04120 0.22 +0.4
231,278 + H281DRAFT_04120 0.22 +0.4
231,413 + H281DRAFT_04120 0.33 -3.4
231,413 + -1.2
231,414 - H281DRAFT_04120 0.33 -1.6
231,416 + H281DRAFT_04120 0.33 +0.4
231,495 - H281DRAFT_04120 0.39 -1.4
231,680 + H281DRAFT_04120 0.55 -3.3
231,680 + H281DRAFT_04120 0.55 -3.2
231,680 + H281DRAFT_04120 0.55 -2.7
231,681 - H281DRAFT_04120 0.55 -1.9
231,818 + H281DRAFT_04120 0.66 -1.8
231,845 + H281DRAFT_04120 0.68 -3.5
231,902 - H281DRAFT_04120 0.73 +0.8
231,965 + H281DRAFT_04120 0.78 -2.7
232,061 + H281DRAFT_04120 0.86 -3.7
232,062 - H281DRAFT_04120 0.86 -1.6
232,151 + -0.9
232,151 + -3.2
232,198 + -4.0
232,389 + -0.9
232,486 - -0.0
232,486 - -0.3

Or see this region's nucleotide sequence