Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04063 and H281DRAFT_04064 are separated by 535 nucleotides H281DRAFT_04064 and H281DRAFT_04065 are separated by 2 nucleotides H281DRAFT_04065 and H281DRAFT_04066 are separated by 66 nucleotides
H281DRAFT_04063: H281DRAFT_04063 - amino acid/amide ABC transporter substrate-binding protein, HAAT family, at 164,361 to 165,563
_04063
H281DRAFT_04064: H281DRAFT_04064 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 166,099 to 167,058
_04064
H281DRAFT_04065: H281DRAFT_04065 - FKBP-type peptidyl-prolyl cis-trans isomerase SlpA, at 167,061 to 167,627
_04065
H281DRAFT_04066: H281DRAFT_04066 - DNA replication and repair protein RadC, at 167,694 to 168,458
_04066
Position (kb) 166
167
168 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 165.148 kb on + strand, within H281DRAFT_04063 at 165.149 kb on - strand, within H281DRAFT_04063 at 165.149 kb on - strand at 165.149 kb on - strand, within H281DRAFT_04063 at 165.568 kb on + strand at 165.569 kb on - strand at 165.569 kb on - strand at 165.569 kb on - strand at 165.569 kb on - strand at 165.593 kb on + strand at 165.633 kb on + strand at 165.634 kb on - strand at 165.634 kb on - strand at 165.657 kb on + strand at 165.658 kb on - strand at 165.658 kb on - strand at 165.835 kb on - strand at 165.845 kb on + strand at 165.845 kb on + strand at 165.845 kb on + strand at 165.877 kb on + strand at 165.878 kb on - strand at 165.878 kb on - strand at 165.890 kb on + strand at 165.890 kb on + strand at 165.891 kb on - strand at 165.916 kb on - strand at 165.945 kb on + strand at 166.086 kb on + strand at 166.087 kb on - strand at 166.308 kb on + strand, within H281DRAFT_04064 at 166.309 kb on - strand at 166.310 kb on + strand, within H281DRAFT_04064 at 166.310 kb on + strand, within H281DRAFT_04064 at 166.310 kb on + strand, within H281DRAFT_04064 at 166.311 kb on - strand, within H281DRAFT_04064 at 166.311 kb on - strand, within H281DRAFT_04064 at 166.311 kb on - strand at 166.445 kb on + strand, within H281DRAFT_04064 at 166.445 kb on + strand at 166.445 kb on + strand at 166.485 kb on - strand, within H281DRAFT_04064 at 166.485 kb on - strand, within H281DRAFT_04064 at 166.614 kb on - strand, within H281DRAFT_04064 at 166.905 kb on + strand, within H281DRAFT_04064 at 167.063 kb on - strand at 167.618 kb on + strand at 167.618 kb on + strand at 167.618 kb on + strand at 167.618 kb on + strand at 167.691 kb on + strand at 167.691 kb on + strand at 167.691 kb on + strand at 167.691 kb on + strand at 167.691 kb on + strand at 167.691 kb on + strand at 167.691 kb on + strand at 167.691 kb on + strand at 167.691 kb on + strand at 167.691 kb on + strand at 167.692 kb on - strand at 167.692 kb on - strand at 167.692 kb on - strand at 167.692 kb on - strand at 167.692 kb on - strand at 167.692 kb on - strand at 167.692 kb on - strand at 167.693 kb on + strand at 167.693 kb on + strand at 167.693 kb on + strand at 167.693 kb on + strand at 167.694 kb on - strand at 167.694 kb on - strand at 167.694 kb on - strand at 167.704 kb on - strand at 167.704 kb on - strand at 167.704 kb on - strand at 167.704 kb on - strand at 167.851 kb on + strand, within H281DRAFT_04066 at 167.852 kb on - strand, within H281DRAFT_04066 at 167.852 kb on - strand, within H281DRAFT_04066 at 167.852 kb on - strand, within H281DRAFT_04066 at 167.881 kb on + strand, within H281DRAFT_04066 at 167.976 kb on + strand, within H281DRAFT_04066 at 167.976 kb on + strand, within H281DRAFT_04066 at 167.977 kb on - strand, within H281DRAFT_04066 at 167.977 kb on - strand, within H281DRAFT_04066
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 165,148 + H281DRAFT_04063 0.65 +0.1 165,149 - H281DRAFT_04063 0.66 -0.0 165,149 - -1.2 165,149 - H281DRAFT_04063 0.66 +1.7 165,568 + -2.2 165,569 - +0.3 165,569 - +1.1 165,569 - -1.1 165,569 - -0.4 165,593 + +1.0 165,633 + -0.3 165,634 - -0.9 165,634 - +0.4 165,657 + -0.5 165,658 - +0.1 165,658 - +0.4 165,835 - -0.3 165,845 + -1.6 165,845 + -0.5 165,845 + +0.2 165,877 + -0.7 165,878 - -0.4 165,878 - -0.6 165,890 + +0.2 165,890 + +0.9 165,891 - +0.3 165,916 - +0.4 165,945 + -0.3 166,086 + -0.3 166,087 - -0.4 166,308 + H281DRAFT_04064 0.22 -0.2 166,309 - +0.4 166,310 + H281DRAFT_04064 0.22 +1.4 166,310 + H281DRAFT_04064 0.22 -1.4 166,310 + H281DRAFT_04064 0.22 -0.6 166,311 - H281DRAFT_04064 0.22 +0.6 166,311 - H281DRAFT_04064 0.22 -0.2 166,311 - +0.4 166,445 + H281DRAFT_04064 0.36 -1.7 166,445 + +1.4 166,445 + +0.4 166,485 - H281DRAFT_04064 0.40 -0.4 166,485 - H281DRAFT_04064 0.40 -0.6 166,614 - H281DRAFT_04064 0.54 -1.9 166,905 + H281DRAFT_04064 0.84 -0.9 167,063 - -1.0 167,618 + +0.7 167,618 + +1.0 167,618 + -0.4 167,618 + -0.3 167,691 + +1.4 167,691 + -0.3 167,691 + -0.4 167,691 + +0.9 167,691 + -0.7 167,691 + -0.1 167,691 + -1.0 167,691 + +1.2 167,691 + -0.7 167,691 + +1.0 167,692 - -0.3 167,692 - -0.5 167,692 - +1.3 167,692 - +0.4 167,692 - -1.0 167,692 - -0.0 167,692 - -0.7 167,693 + -0.1 167,693 + +0.3 167,693 + +1.6 167,693 + +1.3 167,694 - +0.2 167,694 - +0.2 167,694 - -0.1 167,704 - -0.8 167,704 - -0.5 167,704 - +0.2 167,704 - +0.3 167,851 + H281DRAFT_04066 0.21 -0.7 167,852 - H281DRAFT_04066 0.21 -0.1 167,852 - H281DRAFT_04066 0.21 +0.1 167,852 - H281DRAFT_04066 0.21 +1.7 167,881 + H281DRAFT_04066 0.24 +1.1 167,976 + H281DRAFT_04066 0.37 +3.2 167,976 + H281DRAFT_04066 0.37 +0.6 167,977 - H281DRAFT_04066 0.37 +1.0 167,977 - H281DRAFT_04066 0.37 +0.6
Or see this region's nucleotide sequence