Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04025 and H281DRAFT_04026 are separated by 602 nucleotides H281DRAFT_04026 and H281DRAFT_04027 are separated by 58 nucleotides H281DRAFT_04027 and H281DRAFT_04028 are separated by 76 nucleotides
H281DRAFT_04025: H281DRAFT_04025 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 126,877 to 128,076
_04025
H281DRAFT_04026: H281DRAFT_04026 - 3-octaprenyl-4hydroxybenzoate decarboxylase, at 128,679 to 130,247
_04026
H281DRAFT_04027: H281DRAFT_04027 - L-lysine exporter family protein LysE/ArgO, at 130,306 to 131,001
_04027
H281DRAFT_04028: H281DRAFT_04028 - threonine dehydratase, at 131,078 to 132,052
_04028
Position (kb) 128
129
130
131 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 127.709 kb on + strand, within H281DRAFT_04025 at 128.041 kb on - strand at 128.041 kb on - strand at 128.205 kb on - strand at 128.316 kb on - strand at 128.316 kb on - strand at 128.316 kb on - strand at 128.328 kb on + strand at 128.389 kb on - strand at 128.389 kb on - strand at 128.427 kb on - strand at 128.472 kb on - strand at 128.562 kb on - strand at 128.564 kb on + strand at 128.565 kb on - strand at 128.579 kb on + strand at 128.580 kb on - strand at 128.601 kb on + strand at 128.648 kb on + strand at 128.685 kb on + strand at 128.685 kb on + strand at 128.686 kb on - strand at 128.764 kb on + strand at 129.232 kb on - strand, within H281DRAFT_04026 at 129.359 kb on - strand, within H281DRAFT_04026 at 129.533 kb on + strand, within H281DRAFT_04026 at 129.533 kb on + strand, within H281DRAFT_04026 at 129.534 kb on - strand, within H281DRAFT_04026 at 129.538 kb on - strand, within H281DRAFT_04026 at 129.547 kb on + strand, within H281DRAFT_04026 at 129.647 kb on + strand, within H281DRAFT_04026 at 129.735 kb on + strand, within H281DRAFT_04026 at 129.838 kb on - strand, within H281DRAFT_04026 at 129.861 kb on + strand, within H281DRAFT_04026 at 129.862 kb on - strand, within H281DRAFT_04026 at 129.954 kb on + strand, within H281DRAFT_04026 at 129.954 kb on + strand, within H281DRAFT_04026 at 129.957 kb on - strand, within H281DRAFT_04026 at 130.084 kb on - strand, within H281DRAFT_04026 at 130.145 kb on + strand at 130.146 kb on - strand at 130.146 kb on - strand at 130.279 kb on + strand at 130.280 kb on - strand at 130.280 kb on - strand at 130.461 kb on + strand, within H281DRAFT_04027 at 130.461 kb on + strand, within H281DRAFT_04027 at 130.461 kb on + strand, within H281DRAFT_04027 at 130.462 kb on - strand, within H281DRAFT_04027 at 130.462 kb on - strand, within H281DRAFT_04027 at 130.462 kb on - strand, within H281DRAFT_04027 at 130.462 kb on - strand, within H281DRAFT_04027 at 130.465 kb on + strand, within H281DRAFT_04027 at 130.465 kb on + strand, within H281DRAFT_04027 at 130.466 kb on - strand, within H281DRAFT_04027 at 130.564 kb on - strand, within H281DRAFT_04027 at 130.912 kb on + strand, within H281DRAFT_04027 at 130.912 kb on + strand, within H281DRAFT_04027 at 130.913 kb on - strand, within H281DRAFT_04027 at 130.913 kb on - strand, within H281DRAFT_04027 at 130.921 kb on + strand, within H281DRAFT_04027 at 130.922 kb on - strand, within H281DRAFT_04027 at 131.002 kb on + strand at 131.002 kb on + strand at 131.003 kb on - strand at 131.003 kb on - strand at 131.089 kb on - strand at 131.089 kb on - strand at 131.116 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 127,709 + H281DRAFT_04025 0.69 +2.1 128,041 - -0.6 128,041 - +0.9 128,205 - +0.1 128,316 - -0.4 128,316 - +0.6 128,316 - -0.4 128,328 + +0.0 128,389 - -0.3 128,389 - +0.5 128,427 - -0.6 128,472 - +0.3 128,562 - +0.8 128,564 + +0.2 128,565 - -0.1 128,579 + +0.3 128,580 - +0.6 128,601 + +0.2 128,648 + +1.2 128,685 + -2.6 128,685 + -2.4 128,686 - -1.6 128,764 + -2.4 129,232 - H281DRAFT_04026 0.35 -2.8 129,359 - H281DRAFT_04026 0.43 -4.0 129,533 + H281DRAFT_04026 0.54 -3.1 129,533 + H281DRAFT_04026 0.54 -1.9 129,534 - H281DRAFT_04026 0.54 -3.4 129,538 - H281DRAFT_04026 0.55 -4.7 129,547 + H281DRAFT_04026 0.55 -2.7 129,647 + H281DRAFT_04026 0.62 -1.2 129,735 + H281DRAFT_04026 0.67 -1.9 129,838 - H281DRAFT_04026 0.74 -4.1 129,861 + H281DRAFT_04026 0.75 -2.3 129,862 - H281DRAFT_04026 0.75 -3.1 129,954 + H281DRAFT_04026 0.81 -5.1 129,954 + H281DRAFT_04026 0.81 -0.2 129,957 - H281DRAFT_04026 0.81 +0.6 130,084 - H281DRAFT_04026 0.90 -4.1 130,145 + -1.4 130,146 - -3.2 130,146 - -3.5 130,279 + -0.0 130,280 - -0.7 130,280 - +1.2 130,461 + H281DRAFT_04027 0.22 +0.2 130,461 + H281DRAFT_04027 0.22 +0.3 130,461 + H281DRAFT_04027 0.22 -1.1 130,462 - H281DRAFT_04027 0.22 -0.5 130,462 - H281DRAFT_04027 0.22 +0.4 130,462 - H281DRAFT_04027 0.22 -0.0 130,462 - H281DRAFT_04027 0.22 -0.4 130,465 + H281DRAFT_04027 0.23 +0.1 130,465 + H281DRAFT_04027 0.23 -0.8 130,466 - H281DRAFT_04027 0.23 -0.1 130,564 - H281DRAFT_04027 0.37 -0.6 130,912 + H281DRAFT_04027 0.87 +0.8 130,912 + H281DRAFT_04027 0.87 +0.7 130,913 - H281DRAFT_04027 0.87 +0.4 130,913 - H281DRAFT_04027 0.87 -0.0 130,921 + H281DRAFT_04027 0.88 -0.9 130,922 - H281DRAFT_04027 0.89 -2.1 131,002 + +0.5 131,002 + +0.2 131,003 - +1.0 131,003 - +0.9 131,089 - -0.3 131,089 - +1.7 131,116 + +2.4
Or see this region's nucleotide sequence