Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03931

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03929 and H281DRAFT_03930 are separated by 202 nucleotidesH281DRAFT_03930 and H281DRAFT_03931 are separated by 29 nucleotidesH281DRAFT_03931 and H281DRAFT_03933 are separated by 630 nucleotides H281DRAFT_03929: H281DRAFT_03929 - OmpA-OmpF porin, OOP family, at 28,135 to 28,782 _03929 H281DRAFT_03930: H281DRAFT_03930 - 3-demethylubiquinone-9 3-methyltransferase, at 28,985 to 29,683 _03930 H281DRAFT_03931: H281DRAFT_03931 - phosphoglycolate phosphatase, at 29,713 to 30,426 _03931 H281DRAFT_03933: H281DRAFT_03933 - outer membrane protein, at 31,057 to 32,592 _03933 Position (kb) 29 30 31Strain fitness (log2 ratio) -3 -2 -1 0 1at 28.792 kb on + strandat 28.793 kb on - strandat 28.800 kb on + strandat 28.800 kb on + strandat 28.801 kb on - strandat 28.925 kb on + strandat 28.925 kb on + strandat 28.925 kb on + strandat 28.925 kb on + strandat 28.926 kb on - strandat 28.926 kb on - strandat 28.926 kb on - strandat 28.926 kb on - strandat 28.926 kb on - strandat 28.927 kb on + strandat 28.927 kb on + strandat 28.927 kb on + strandat 28.927 kb on + strandat 28.927 kb on + strandat 28.927 kb on + strandat 28.928 kb on - strandat 28.928 kb on - strandat 28.928 kb on - strandat 28.928 kb on - strandat 28.929 kb on + strandat 28.929 kb on + strandat 28.929 kb on + strandat 29.725 kb on - strandat 29.889 kb on - strandat 29.995 kb on + strand, within H281DRAFT_03931at 29.996 kb on - strand, within H281DRAFT_03931at 30.175 kb on - strand, within H281DRAFT_03931at 30.256 kb on + strand, within H281DRAFT_03931at 30.326 kb on - strand, within H281DRAFT_03931at 30.505 kb on + strandat 30.505 kb on + strandat 30.505 kb on + strandat 30.860 kb on - strandat 30.988 kb on + strandat 31.199 kb on - strandat 31.306 kb on - strand, within H281DRAFT_03933at 31.379 kb on + strand, within H281DRAFT_03933at 31.380 kb on - strand, within H281DRAFT_03933at 31.393 kb on - strand, within H281DRAFT_03933

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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28,792 + -2.6
28,793 - -0.2
28,800 + -1.1
28,800 + -3.7
28,801 - -1.6
28,925 + -0.3
28,925 + +0.7
28,925 + +0.8
28,925 + -1.2
28,926 - -0.0
28,926 - -0.2
28,926 - -0.3
28,926 - +0.2
28,926 - +0.3
28,927 + -0.2
28,927 + +0.6
28,927 + -0.7
28,927 + +1.5
28,927 + -0.7
28,927 + +1.0
28,928 - -0.1
28,928 - -0.4
28,928 - +0.0
28,928 - -0.5
28,929 + +1.7
28,929 + -1.5
28,929 + -0.4
29,725 - -0.2
29,889 - +0.1
29,995 + H281DRAFT_03931 0.39 -1.9
29,996 - H281DRAFT_03931 0.40 -0.6
30,175 - H281DRAFT_03931 0.65 -2.3
30,256 + H281DRAFT_03931 0.76 +0.2
30,326 - H281DRAFT_03931 0.86 -2.9
30,505 + +0.4
30,505 + -0.6
30,505 + -0.4
30,860 - +1.0
30,988 + -1.1
31,199 - -1.9
31,306 - H281DRAFT_03933 0.16 -0.9
31,379 + H281DRAFT_03933 0.21 -0.5
31,380 - H281DRAFT_03933 0.21 -0.2
31,393 - H281DRAFT_03933 0.22 -0.6

Or see this region's nucleotide sequence