Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03929 and H281DRAFT_03930 are separated by 202 nucleotides H281DRAFT_03930 and H281DRAFT_03931 are separated by 29 nucleotides H281DRAFT_03931 and H281DRAFT_03933 are separated by 630 nucleotides
H281DRAFT_03929: H281DRAFT_03929 - OmpA-OmpF porin, OOP family, at 28,135 to 28,782
_03929
H281DRAFT_03930: H281DRAFT_03930 - 3-demethylubiquinone-9 3-methyltransferase, at 28,985 to 29,683
_03930
H281DRAFT_03931: H281DRAFT_03931 - phosphoglycolate phosphatase, at 29,713 to 30,426
_03931
H281DRAFT_03933: H281DRAFT_03933 - outer membrane protein, at 31,057 to 32,592
_03933
Position (kb)
29
30
31 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 28.792 kb on + strand at 28.793 kb on - strand at 28.800 kb on + strand at 28.800 kb on + strand at 28.801 kb on - strand at 28.925 kb on + strand at 28.925 kb on + strand at 28.925 kb on + strand at 28.925 kb on + strand at 28.926 kb on - strand at 28.926 kb on - strand at 28.926 kb on - strand at 28.926 kb on - strand at 28.926 kb on - strand at 28.927 kb on + strand at 28.927 kb on + strand at 28.927 kb on + strand at 28.927 kb on + strand at 28.927 kb on + strand at 28.927 kb on + strand at 28.928 kb on - strand at 28.928 kb on - strand at 28.928 kb on - strand at 28.928 kb on - strand at 28.929 kb on + strand at 28.929 kb on + strand at 28.929 kb on + strand at 29.725 kb on - strand at 29.889 kb on - strand at 29.995 kb on + strand, within H281DRAFT_03931 at 29.996 kb on - strand, within H281DRAFT_03931 at 30.175 kb on - strand, within H281DRAFT_03931 at 30.256 kb on + strand, within H281DRAFT_03931 at 30.326 kb on - strand, within H281DRAFT_03931 at 30.505 kb on + strand at 30.505 kb on + strand at 30.505 kb on + strand at 30.860 kb on - strand at 30.988 kb on + strand at 31.199 kb on - strand at 31.306 kb on - strand, within H281DRAFT_03933 at 31.379 kb on + strand, within H281DRAFT_03933 at 31.380 kb on - strand, within H281DRAFT_03933 at 31.393 kb on - strand, within H281DRAFT_03933
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 28,792 + -2.6 28,793 - -0.2 28,800 + -1.1 28,800 + -3.7 28,801 - -1.6 28,925 + -0.3 28,925 + +0.7 28,925 + +0.8 28,925 + -1.2 28,926 - -0.0 28,926 - -0.2 28,926 - -0.3 28,926 - +0.2 28,926 - +0.3 28,927 + -0.2 28,927 + +0.6 28,927 + -0.7 28,927 + +1.5 28,927 + -0.7 28,927 + +1.0 28,928 - -0.1 28,928 - -0.4 28,928 - +0.0 28,928 - -0.5 28,929 + +1.7 28,929 + -1.5 28,929 + -0.4 29,725 - -0.2 29,889 - +0.1 29,995 + H281DRAFT_03931 0.39 -1.9 29,996 - H281DRAFT_03931 0.40 -0.6 30,175 - H281DRAFT_03931 0.65 -2.3 30,256 + H281DRAFT_03931 0.76 +0.2 30,326 - H281DRAFT_03931 0.86 -2.9 30,505 + +0.4 30,505 + -0.6 30,505 + -0.4 30,860 - +1.0 30,988 + -1.1 31,199 - -1.9 31,306 - H281DRAFT_03933 0.16 -0.9 31,379 + H281DRAFT_03933 0.21 -0.5 31,380 - H281DRAFT_03933 0.21 -0.2 31,393 - H281DRAFT_03933 0.22 -0.6
Or see this region's nucleotide sequence