Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03798 and H281DRAFT_03799 are separated by 16 nucleotides H281DRAFT_03799 and H281DRAFT_03800 are separated by 37 nucleotides H281DRAFT_03800 and H281DRAFT_03801 are separated by 226 nucleotides H281DRAFT_03801 and H281DRAFT_03802 overlap by 11 nucleotides
H281DRAFT_03798: H281DRAFT_03798 - NitT/TauT family transport system permease protein, at 319,127 to 319,990
_03798
H281DRAFT_03799: H281DRAFT_03799 - NitT/TauT family transport system ATP-binding protein, at 320,007 to 320,801
_03799
H281DRAFT_03800: H281DRAFT_03800 - NitT/TauT family transport system substrate-binding protein, at 320,839 to 321,858
_03800
H281DRAFT_03801: H281DRAFT_03801 - two component transcriptional regulator, winged helix family, at 322,085 to 322,822
_03801
H281DRAFT_03802: H281DRAFT_03802 - two-component system, OmpR family, sensor histidine kinase TctE, at 322,812 to 324,206
_03802
Position (kb) 320
321
322 Strain fitness (log2 ratio) -1
0
1
2 at 320.789 kb on + strand at 320.789 kb on + strand at 320.885 kb on + strand at 321.048 kb on - strand, within H281DRAFT_03800 at 321.050 kb on + strand, within H281DRAFT_03800 at 321.411 kb on - strand, within H281DRAFT_03800 at 321.588 kb on + strand, within H281DRAFT_03800 at 321.610 kb on + strand, within H281DRAFT_03800 at 321.929 kb on + strand at 322.033 kb on + strand at 322.633 kb on + strand, within H281DRAFT_03801 at 322.721 kb on + strand, within H281DRAFT_03801 at 322.724 kb on - strand, within H281DRAFT_03801 at 322.820 kb on + strand at 322.820 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 320,789 + -0.8 320,789 + -0.8 320,885 + +0.5 321,048 - H281DRAFT_03800 0.20 -0.4 321,050 + H281DRAFT_03800 0.21 +1.3 321,411 - H281DRAFT_03800 0.56 -1.1 321,588 + H281DRAFT_03800 0.73 -0.5 321,610 + H281DRAFT_03800 0.76 +0.5 321,929 + -0.9 322,033 + +1.3 322,633 + H281DRAFT_03801 0.74 -0.1 322,721 + H281DRAFT_03801 0.86 -0.6 322,724 - H281DRAFT_03801 0.87 -0.7 322,820 + +2.1 322,820 + +0.4
Or see this region's nucleotide sequence