Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03640

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03638 and H281DRAFT_03639 are separated by 32 nucleotidesH281DRAFT_03639 and H281DRAFT_03640 are separated by 0 nucleotidesH281DRAFT_03640 and H281DRAFT_03641 overlap by 4 nucleotidesH281DRAFT_03641 and H281DRAFT_03642 overlap by 32 nucleotides H281DRAFT_03638: H281DRAFT_03638 - Cupin domain-containing protein, at 146,770 to 147,297 _03638 H281DRAFT_03639: H281DRAFT_03639 - Pimeloyl-ACP methyl ester carboxylesterase, at 147,330 to 148,223 _03639 H281DRAFT_03640: H281DRAFT_03640 - transcriptional regulator, IclR family, at 148,224 to 149,108 _03640 H281DRAFT_03641: H281DRAFT_03641 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 149,105 to 149,914 _03641 H281DRAFT_03642: H281DRAFT_03642 - acetolactate synthase-1/2/3 large subunit, at 149,883 to 151,565 _03642 Position (kb) 148 149 150Strain fitness (log2 ratio) -1 0 1at 148.733 kb on + strand, within H281DRAFT_03640at 148.734 kb on - strand, within H281DRAFT_03640at 149.009 kb on - strand, within H281DRAFT_03640at 149.459 kb on + strand, within H281DRAFT_03641at 149.581 kb on + strand, within H281DRAFT_03641at 149.582 kb on - strand, within H281DRAFT_03641at 149.793 kb on + strand, within H281DRAFT_03641at 149.838 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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148,733 + H281DRAFT_03640 0.58 -1.1
148,734 - H281DRAFT_03640 0.58 -0.3
149,009 - H281DRAFT_03640 0.89 +0.1
149,459 + H281DRAFT_03641 0.44 +0.1
149,581 + H281DRAFT_03641 0.59 -0.5
149,582 - H281DRAFT_03641 0.59 +0.5
149,793 + H281DRAFT_03641 0.85 +0.7
149,838 - -0.3

Or see this region's nucleotide sequence