Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03577 and H281DRAFT_03578 overlap by 4 nucleotides H281DRAFT_03578 and H281DRAFT_03579 are separated by 43 nucleotides H281DRAFT_03579 and H281DRAFT_03580 are separated by 659 nucleotides
H281DRAFT_03577: H281DRAFT_03577 - hypothetical protein, at 85,161 to 85,700
_03577
H281DRAFT_03578: H281DRAFT_03578 - methyl-accepting chemotaxis sensory transducer, at 85,697 to 86,431
_03578
H281DRAFT_03579: H281DRAFT_03579 - hypothetical protein, at 86,475 to 88,826
_03579
H281DRAFT_03580: H281DRAFT_03580 - diguanylate cyclase (GGDEF) domain-containing protein, at 89,486 to 90,703
_03580
Position (kb) 86
87
88
89 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 85.552 kb on - strand, within H281DRAFT_03577 at 85.663 kb on - strand at 85.846 kb on - strand, within H281DRAFT_03578 at 86.352 kb on + strand at 86.414 kb on + strand at 86.419 kb on - strand at 86.600 kb on + strand at 86.601 kb on - strand at 87.247 kb on + strand, within H281DRAFT_03579 at 87.415 kb on + strand, within H281DRAFT_03579 at 87.494 kb on + strand, within H281DRAFT_03579 at 87.494 kb on + strand, within H281DRAFT_03579 at 87.744 kb on - strand, within H281DRAFT_03579 at 88.397 kb on + strand, within H281DRAFT_03579 at 88.398 kb on - strand, within H281DRAFT_03579 at 88.418 kb on - strand, within H281DRAFT_03579 at 88.442 kb on - strand, within H281DRAFT_03579 at 88.507 kb on + strand, within H281DRAFT_03579 at 88.508 kb on - strand, within H281DRAFT_03579 at 88.508 kb on - strand, within H281DRAFT_03579 at 88.704 kb on + strand at 88.705 kb on - strand at 88.787 kb on - strand at 88.827 kb on + strand at 88.827 kb on + strand at 88.828 kb on - strand at 88.828 kb on - strand at 88.839 kb on + strand at 88.844 kb on + strand at 88.845 kb on - strand at 88.845 kb on - strand at 88.859 kb on + strand at 88.987 kb on + strand at 88.995 kb on + strand at 89.086 kb on + strand at 89.135 kb on + strand at 89.152 kb on + strand at 89.208 kb on - strand at 89.454 kb on + strand at 89.544 kb on + strand at 89.544 kb on + strand at 89.545 kb on - strand at 89.574 kb on + strand at 89.574 kb on + strand at 89.574 kb on + strand at 89.574 kb on + strand at 89.575 kb on - strand at 89.575 kb on - strand at 89.575 kb on - strand at 89.575 kb on - strand at 89.677 kb on - strand, within H281DRAFT_03580 at 89.765 kb on + strand, within H281DRAFT_03580 at 89.766 kb on - strand, within H281DRAFT_03580 at 89.766 kb on - strand, within H281DRAFT_03580
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 85,552 - H281DRAFT_03577 0.72 -0.8 85,663 - -1.1 85,846 - H281DRAFT_03578 0.20 +1.1 86,352 + -1.9 86,414 + +0.2 86,419 - +0.4 86,600 + -1.4 86,601 - +0.4 87,247 + H281DRAFT_03579 0.33 -0.4 87,415 + H281DRAFT_03579 0.40 +0.4 87,494 + H281DRAFT_03579 0.43 +0.5 87,494 + H281DRAFT_03579 0.43 +0.3 87,744 - H281DRAFT_03579 0.54 +1.0 88,397 + H281DRAFT_03579 0.82 -0.2 88,398 - H281DRAFT_03579 0.82 +0.4 88,418 - H281DRAFT_03579 0.83 +0.2 88,442 - H281DRAFT_03579 0.84 -0.8 88,507 + H281DRAFT_03579 0.86 +0.2 88,508 - H281DRAFT_03579 0.86 +0.9 88,508 - H281DRAFT_03579 0.86 +0.8 88,704 + +0.1 88,705 - +1.5 88,787 - -0.4 88,827 + -0.9 88,827 + +0.4 88,828 - -0.2 88,828 - -0.4 88,839 + -0.0 88,844 + -0.1 88,845 - -0.5 88,845 - +1.5 88,859 + +0.0 88,987 + +0.5 88,995 + +0.3 89,086 + -0.5 89,135 + +0.2 89,152 + +1.0 89,208 - -0.5 89,454 + +0.8 89,544 + -0.3 89,544 + +2.9 89,545 - -0.4 89,574 + -0.3 89,574 + +0.1 89,574 + -0.0 89,574 + -0.4 89,575 - +0.7 89,575 - -0.9 89,575 - -0.0 89,575 - -0.3 89,677 - H281DRAFT_03580 0.16 +0.0 89,765 + H281DRAFT_03580 0.23 -0.9 89,766 - H281DRAFT_03580 0.23 -1.9 89,766 - H281DRAFT_03580 0.23 +0.5
Or see this region's nucleotide sequence