Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03576 and H281DRAFT_03577 are separated by 28 nucleotides H281DRAFT_03577 and H281DRAFT_03578 overlap by 4 nucleotides H281DRAFT_03578 and H281DRAFT_03579 are separated by 43 nucleotides
H281DRAFT_03576: H281DRAFT_03576 - two-component system, chemotaxis family, response regulator CheY, at 84,767 to 85,132
_03576
H281DRAFT_03577: H281DRAFT_03577 - hypothetical protein, at 85,161 to 85,700
_03577
H281DRAFT_03578: H281DRAFT_03578 - methyl-accepting chemotaxis sensory transducer, at 85,697 to 86,431
_03578
H281DRAFT_03579: H281DRAFT_03579 - hypothetical protein, at 86,475 to 88,826
_03579
Position (kb) 85
86
87 Strain fitness (log2 ratio) -2
-1
0
1
2 at 84.699 kb on - strand at 84.944 kb on - strand, within H281DRAFT_03576 at 85.004 kb on - strand, within H281DRAFT_03576 at 85.115 kb on + strand at 85.132 kb on + strand at 85.133 kb on - strand at 85.133 kb on - strand at 85.289 kb on - strand at 85.351 kb on + strand, within H281DRAFT_03577 at 85.352 kb on - strand, within H281DRAFT_03577 at 85.381 kb on + strand, within H281DRAFT_03577 at 85.382 kb on - strand, within H281DRAFT_03577 at 85.552 kb on - strand, within H281DRAFT_03577 at 85.663 kb on - strand at 85.846 kb on - strand, within H281DRAFT_03578 at 86.352 kb on + strand at 86.414 kb on + strand at 86.419 kb on - strand at 86.600 kb on + strand at 86.601 kb on - strand at 87.247 kb on + strand, within H281DRAFT_03579 at 87.415 kb on + strand, within H281DRAFT_03579
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 84,699 - +0.4 84,944 - H281DRAFT_03576 0.48 +1.3 85,004 - H281DRAFT_03576 0.65 +2.4 85,115 + -0.3 85,132 + -0.2 85,133 - +0.7 85,133 - +0.2 85,289 - +0.1 85,351 + H281DRAFT_03577 0.35 +0.6 85,352 - H281DRAFT_03577 0.35 -0.9 85,381 + H281DRAFT_03577 0.41 +0.5 85,382 - H281DRAFT_03577 0.41 +0.3 85,552 - H281DRAFT_03577 0.72 -0.8 85,663 - -1.1 85,846 - H281DRAFT_03578 0.20 +1.1 86,352 + -1.9 86,414 + +0.2 86,419 - +0.4 86,600 + -1.4 86,601 - +0.4 87,247 + H281DRAFT_03579 0.33 -0.4 87,415 + H281DRAFT_03579 0.40 +0.4
Or see this region's nucleotide sequence