Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03471 and H281DRAFT_03472 are separated by 349 nucleotides H281DRAFT_03472 and H281DRAFT_03473 are separated by 154 nucleotides H281DRAFT_03473 and H281DRAFT_03474 are separated by 289 nucleotides H281DRAFT_03474 and H281DRAFT_03475 are separated by 5 nucleotides H281DRAFT_03475 and H281DRAFT_03476 are separated by 140 nucleotides
H281DRAFT_03471: H281DRAFT_03471 - Carboxypeptidase C (cathepsin A), at 554,557 to 556,212
_03471
H281DRAFT_03472: H281DRAFT_03472 - hypothetical protein, at 556,562 to 557,014
_03472
H281DRAFT_03473: H281DRAFT_03473 - hypothetical protein, at 557,169 to 557,528
_03473
H281DRAFT_03474: H281DRAFT_03474 - hypothetical protein, at 557,818 to 557,964
_03474
H281DRAFT_03475: H281DRAFT_03475 - hypothetical protein, at 557,970 to 558,236
_03475
H281DRAFT_03476: H281DRAFT_03476 - NAD+ synthase, at 558,377 to 559,237
_03476
Position (kb) 557
558 Strain fitness (log2 ratio) -1
0
1
2
3 at 556.179 kb on + strand at 556.211 kb on - strand at 556.346 kb on + strand at 556.428 kb on + strand at 556.428 kb on + strand at 556.428 kb on + strand at 556.429 kb on - strand at 556.429 kb on - strand at 556.429 kb on - strand at 556.429 kb on - strand at 556.429 kb on - strand at 556.429 kb on - strand at 556.429 kb on - strand at 556.432 kb on + strand at 556.433 kb on - strand at 556.606 kb on - strand at 556.620 kb on - strand, within H281DRAFT_03472 at 557.152 kb on - strand at 557.242 kb on + strand, within H281DRAFT_03473 at 557.242 kb on + strand, within H281DRAFT_03473 at 557.328 kb on + strand, within H281DRAFT_03473 at 557.398 kb on + strand, within H281DRAFT_03473 at 557.399 kb on - strand, within H281DRAFT_03473 at 557.571 kb on - strand at 557.703 kb on + strand at 557.704 kb on - strand at 557.704 kb on - strand at 557.830 kb on + strand at 557.830 kb on + strand at 557.830 kb on + strand at 557.831 kb on - strand at 557.831 kb on - strand at 557.831 kb on - strand at 557.949 kb on + strand, within H281DRAFT_03474 at 557.950 kb on - strand at 558.051 kb on + strand, within H281DRAFT_03475 at 558.206 kb on - strand, within H281DRAFT_03475 at 558.281 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 556,179 + +0.6 556,211 - +0.1 556,346 + +0.5 556,428 + +0.0 556,428 + -0.8 556,428 + +0.1 556,429 - +1.6 556,429 - +1.7 556,429 - -0.5 556,429 - +0.2 556,429 - +0.1 556,429 - -0.7 556,429 - -0.5 556,432 + +3.1 556,433 - +0.3 556,606 - -0.3 556,620 - H281DRAFT_03472 0.13 -0.5 557,152 - +0.5 557,242 + H281DRAFT_03473 0.20 +0.1 557,242 + H281DRAFT_03473 0.20 -0.1 557,328 + H281DRAFT_03473 0.44 -0.1 557,398 + H281DRAFT_03473 0.64 -1.2 557,399 - H281DRAFT_03473 0.64 -0.5 557,571 - +0.7 557,703 + +0.5 557,704 - +0.0 557,704 - +0.3 557,830 + -1.1 557,830 + -0.6 557,830 + -0.7 557,831 - -0.1 557,831 - -0.4 557,831 - +0.6 557,949 + H281DRAFT_03474 0.89 +0.6 557,950 - +0.2 558,051 + H281DRAFT_03475 0.30 +0.1 558,206 - H281DRAFT_03475 0.88 -0.4 558,281 - +2.2
Or see this region's nucleotide sequence