Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03243 and H281DRAFT_03244 are separated by 77 nucleotides H281DRAFT_03244 and H281DRAFT_03245 are separated by 41 nucleotides H281DRAFT_03245 and H281DRAFT_03246 are separated by 53 nucleotides
H281DRAFT_03243: H281DRAFT_03243 - hypothetical protein, at 298,327 to 300,243
_03243
H281DRAFT_03244: H281DRAFT_03244 - hypothetical protein, at 300,321 to 300,653
_03244
H281DRAFT_03245: H281DRAFT_03245 - Uncharacterized iron-regulated membrane protein, at 300,695 to 302,221
_03245
H281DRAFT_03246: H281DRAFT_03246 - iron complex outermembrane recepter protein, at 302,275 to 304,719
_03246
Position (kb) 300
301
302
303 Strain fitness (log2 ratio) -2
-1
0
1 at 299.728 kb on + strand, within H281DRAFT_03243 at 299.728 kb on + strand, within H281DRAFT_03243 at 299.833 kb on + strand, within H281DRAFT_03243 at 299.834 kb on - strand, within H281DRAFT_03243 at 300.092 kb on + strand at 300.181 kb on + strand at 300.182 kb on - strand at 300.254 kb on + strand at 300.278 kb on - strand at 300.335 kb on + strand at 300.340 kb on + strand at 300.469 kb on - strand, within H281DRAFT_03244 at 300.474 kb on + strand, within H281DRAFT_03244 at 300.474 kb on + strand, within H281DRAFT_03244 at 300.475 kb on - strand, within H281DRAFT_03244 at 300.545 kb on + strand, within H281DRAFT_03244 at 300.638 kb on + strand at 300.661 kb on - strand at 300.696 kb on + strand at 300.777 kb on - strand at 301.054 kb on - strand, within H281DRAFT_03245 at 301.095 kb on + strand, within H281DRAFT_03245 at 301.095 kb on + strand, within H281DRAFT_03245 at 301.095 kb on + strand, within H281DRAFT_03245 at 301.143 kb on + strand, within H281DRAFT_03245 at 301.144 kb on - strand, within H281DRAFT_03245 at 301.343 kb on - strand, within H281DRAFT_03245 at 301.852 kb on - strand, within H281DRAFT_03245 at 302.333 kb on + strand at 302.334 kb on - strand at 302.381 kb on - strand at 302.424 kb on - strand at 302.424 kb on - strand at 302.444 kb on - strand at 302.481 kb on - strand at 302.481 kb on - strand at 302.538 kb on - strand, within H281DRAFT_03246 at 302.635 kb on - strand, within H281DRAFT_03246 at 302.636 kb on + strand, within H281DRAFT_03246 at 302.674 kb on + strand, within H281DRAFT_03246 at 302.674 kb on + strand, within H281DRAFT_03246 at 302.674 kb on + strand, within H281DRAFT_03246 at 302.674 kb on + strand, within H281DRAFT_03246 at 302.675 kb on - strand, within H281DRAFT_03246 at 302.895 kb on + strand, within H281DRAFT_03246 at 302.896 kb on - strand, within H281DRAFT_03246 at 303.213 kb on + strand, within H281DRAFT_03246
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 299,728 + H281DRAFT_03243 0.73 +0.7 299,728 + H281DRAFT_03243 0.73 +0.3 299,833 + H281DRAFT_03243 0.79 -0.5 299,834 - H281DRAFT_03243 0.79 -1.4 300,092 + -0.4 300,181 + +0.7 300,182 - -0.9 300,254 + -0.9 300,278 - -0.6 300,335 + -0.4 300,340 + -0.8 300,469 - H281DRAFT_03244 0.44 -0.2 300,474 + H281DRAFT_03244 0.46 +0.4 300,474 + H281DRAFT_03244 0.46 -0.1 300,475 - H281DRAFT_03244 0.46 -1.0 300,545 + H281DRAFT_03244 0.67 -0.0 300,638 + -1.1 300,661 - +0.4 300,696 + -0.5 300,777 - +0.1 301,054 - H281DRAFT_03245 0.24 -1.0 301,095 + H281DRAFT_03245 0.26 -0.6 301,095 + H281DRAFT_03245 0.26 -1.2 301,095 + H281DRAFT_03245 0.26 +0.0 301,143 + H281DRAFT_03245 0.29 +1.4 301,144 - H281DRAFT_03245 0.29 +0.1 301,343 - H281DRAFT_03245 0.42 +0.4 301,852 - H281DRAFT_03245 0.76 -0.8 302,333 + -1.0 302,334 - +1.1 302,381 - +1.2 302,424 - -1.3 302,424 - -1.4 302,444 - +1.4 302,481 - -0.6 302,481 - -1.1 302,538 - H281DRAFT_03246 0.11 -0.7 302,635 - H281DRAFT_03246 0.15 +0.4 302,636 + H281DRAFT_03246 0.15 +0.8 302,674 + H281DRAFT_03246 0.16 -2.0 302,674 + H281DRAFT_03246 0.16 -1.6 302,674 + H281DRAFT_03246 0.16 -1.9 302,674 + H281DRAFT_03246 0.16 -2.0 302,675 - H281DRAFT_03246 0.16 +0.5 302,895 + H281DRAFT_03246 0.25 +0.3 302,896 - H281DRAFT_03246 0.25 -1.1 303,213 + H281DRAFT_03246 0.38 +0.1
Or see this region's nucleotide sequence