Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02962

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02960 and H281DRAFT_02961 are separated by 1 nucleotidesH281DRAFT_02961 and H281DRAFT_02962 are separated by 42 nucleotidesH281DRAFT_02962 and H281DRAFT_02963 are separated by 75 nucleotidesH281DRAFT_02963 and H281DRAFT_02964 overlap by 4 nucleotides H281DRAFT_02960: H281DRAFT_02960 - putative spermidine/putrescine transport system permease protein, at 574,683 to 575,597 _02960 H281DRAFT_02961: H281DRAFT_02961 - putative spermidine/putrescine transport system permease protein, at 575,599 to 576,495 _02961 H281DRAFT_02962: H281DRAFT_02962 - transcriptional regulator, TetR family, at 576,538 to 577,251 _02962 H281DRAFT_02963: H281DRAFT_02963 - nucleoside ABC transporter membrane protein, at 577,327 to 578,244 _02963 H281DRAFT_02964: H281DRAFT_02964 - nucleoside ABC transporter membrane protein, at 578,241 to 579,359 _02964 Position (kb) 576 577 578Strain fitness (log2 ratio) -1 0 1 2at 575.768 kb on + strandat 576.637 kb on + strand, within H281DRAFT_02962at 576.638 kb on - strand, within H281DRAFT_02962at 576.692 kb on + strand, within H281DRAFT_02962at 576.716 kb on + strand, within H281DRAFT_02962at 577.055 kb on + strand, within H281DRAFT_02962at 577.056 kb on - strand, within H281DRAFT_02962

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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575,768 + +1.4
576,637 + H281DRAFT_02962 0.14 +2.2
576,638 - H281DRAFT_02962 0.14 -1.2
576,692 + H281DRAFT_02962 0.22 -1.0
576,716 + H281DRAFT_02962 0.25 -1.2
577,055 + H281DRAFT_02962 0.72 +0.7
577,056 - H281DRAFT_02962 0.73 -0.3

Or see this region's nucleotide sequence