Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02899 and H281DRAFT_02900 are separated by 375 nucleotides H281DRAFT_02900 and H281DRAFT_02901 are separated by 26 nucleotides
H281DRAFT_02899: H281DRAFT_02899 - DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains, at 502,926 to 504,377
_02899
H281DRAFT_02900: H281DRAFT_02900 - Small-conductance mechanosensitive channel, at 504,753 to 507,464
_02900
H281DRAFT_02901: H281DRAFT_02901 - DNA excision repair protein ERCC-2, at 507,491 to 509,755
_02901
Position (kb) 504
505
506
507
508 Strain fitness (log2 ratio) -2
-1
0
1
2 at 503.842 kb on - strand, within H281DRAFT_02899 at 503.935 kb on - strand, within H281DRAFT_02899 at 503.935 kb on - strand, within H281DRAFT_02899 at 504.001 kb on - strand, within H281DRAFT_02899 at 504.193 kb on - strand, within H281DRAFT_02899 at 504.241 kb on + strand at 504.241 kb on + strand at 504.242 kb on - strand at 504.350 kb on + strand at 504.356 kb on + strand at 504.356 kb on + strand at 504.531 kb on + strand at 504.531 kb on + strand at 504.532 kb on - strand at 504.532 kb on - strand at 504.532 kb on - strand at 504.532 kb on - strand at 504.548 kb on - strand at 504.629 kb on + strand at 504.630 kb on - strand at 504.745 kb on + strand at 504.753 kb on - strand at 504.763 kb on + strand at 504.767 kb on - strand at 504.767 kb on - strand at 504.767 kb on - strand at 505.294 kb on - strand, within H281DRAFT_02900 at 505.355 kb on - strand, within H281DRAFT_02900 at 505.749 kb on - strand, within H281DRAFT_02900 at 505.749 kb on - strand, within H281DRAFT_02900 at 505.752 kb on + strand, within H281DRAFT_02900 at 505.752 kb on + strand, within H281DRAFT_02900 at 505.855 kb on + strand, within H281DRAFT_02900 at 505.855 kb on + strand, within H281DRAFT_02900 at 506.126 kb on - strand, within H281DRAFT_02900 at 506.323 kb on - strand, within H281DRAFT_02900 at 506.696 kb on + strand, within H281DRAFT_02900 at 506.958 kb on - strand, within H281DRAFT_02900 at 507.544 kb on - strand at 507.640 kb on - strand at 507.645 kb on + strand at 507.646 kb on - strand at 507.646 kb on - strand at 507.651 kb on + strand at 508.139 kb on - strand, within H281DRAFT_02901
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 503,842 - H281DRAFT_02899 0.63 +0.9 503,935 - H281DRAFT_02899 0.69 +1.9 503,935 - H281DRAFT_02899 0.69 -0.2 504,001 - H281DRAFT_02899 0.74 -0.2 504,193 - H281DRAFT_02899 0.87 -0.1 504,241 + +0.7 504,241 + +0.3 504,242 - -0.0 504,350 + -1.1 504,356 + -0.6 504,356 + +1.5 504,531 + +0.7 504,531 + +0.0 504,532 - -0.3 504,532 - +0.4 504,532 - -0.6 504,532 - -0.5 504,548 - -0.4 504,629 + -0.6 504,630 - -0.6 504,745 + -0.6 504,753 - +0.4 504,763 + -0.2 504,767 - +0.1 504,767 - -1.1 504,767 - -0.5 505,294 - H281DRAFT_02900 0.20 -0.3 505,355 - H281DRAFT_02900 0.22 +0.2 505,749 - H281DRAFT_02900 0.37 +0.4 505,749 - H281DRAFT_02900 0.37 +0.5 505,752 + H281DRAFT_02900 0.37 +1.2 505,752 + H281DRAFT_02900 0.37 -1.1 505,855 + H281DRAFT_02900 0.41 +0.4 505,855 + H281DRAFT_02900 0.41 +0.0 506,126 - H281DRAFT_02900 0.51 -1.3 506,323 - H281DRAFT_02900 0.58 -0.0 506,696 + H281DRAFT_02900 0.72 +0.8 506,958 - H281DRAFT_02900 0.81 -1.8 507,544 - +0.9 507,640 - +2.2 507,645 + -0.6 507,646 - +1.4 507,646 - +0.1 507,651 + -1.4 508,139 - H281DRAFT_02901 0.29 +0.6
Or see this region's nucleotide sequence