Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02726 and H281DRAFT_02727 are separated by 176 nucleotides H281DRAFT_02727 and H281DRAFT_02728 are separated by 11 nucleotides
H281DRAFT_02726: H281DRAFT_02726 - Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase, at 311,668 to 313,116
_02726
H281DRAFT_02727: H281DRAFT_02727 - transcriptional regulator, LysR family, at 313,293 to 314,216
_02727
H281DRAFT_02728: H281DRAFT_02728 - Uncharacterized conserved protein, DUF1501 family, at 314,228 to 315,376
_02728
Position (kb) 313
314
315 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 312.365 kb on - strand, within H281DRAFT_02726 at 312.496 kb on + strand, within H281DRAFT_02726 at 312.846 kb on - strand, within H281DRAFT_02726 at 313.026 kb on + strand at 313.104 kb on + strand at 313.104 kb on + strand at 313.231 kb on - strand at 313.314 kb on + strand at 313.315 kb on - strand at 313.459 kb on + strand, within H281DRAFT_02727 at 313.727 kb on - strand, within H281DRAFT_02727 at 313.959 kb on + strand, within H281DRAFT_02727 at 313.960 kb on - strand, within H281DRAFT_02727 at 314.229 kb on + strand at 314.874 kb on + strand, within H281DRAFT_02728
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 312,365 - H281DRAFT_02726 0.48 -0.6 312,496 + H281DRAFT_02726 0.57 +1.0 312,846 - H281DRAFT_02726 0.81 -0.2 313,026 + +2.9 313,104 + -0.6 313,104 + +0.1 313,231 - -0.3 313,314 + -2.1 313,315 - +0.4 313,459 + H281DRAFT_02727 0.18 -1.3 313,727 - H281DRAFT_02727 0.47 -0.4 313,959 + H281DRAFT_02727 0.72 -0.2 313,960 - H281DRAFT_02727 0.72 -0.1 314,229 + -0.6 314,874 + H281DRAFT_02728 0.56 -0.4
Or see this region's nucleotide sequence