Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02528 and H281DRAFT_02529 overlap by 4 nucleotides H281DRAFT_02529 and H281DRAFT_02530 are separated by 50 nucleotides H281DRAFT_02530 and H281DRAFT_02531 are separated by 56 nucleotides H281DRAFT_02531 and H281DRAFT_02532 are separated by 14 nucleotides
H281DRAFT_02528: H281DRAFT_02528 - 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway), at 104,377 to 105,213
_02528
H281DRAFT_02529: H281DRAFT_02529 - shikimate dehydrogenase, at 105,210 to 106,022
_02529
H281DRAFT_02530: H281DRAFT_02530 - transcriptional regulator, IclR family, at 106,073 to 106,864
_02530
H281DRAFT_02531: H281DRAFT_02531 - Acyl dehydratase, at 106,921 to 107,406
_02531
H281DRAFT_02532: H281DRAFT_02532 - Sugar phosphate isomerase/epimerase, at 107,421 to 108,284
_02532
Position (kb) 106
107 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 105.209 kb on + strand at 105.301 kb on + strand, within H281DRAFT_02529 at 105.344 kb on - strand, within H281DRAFT_02529 at 105.347 kb on - strand, within H281DRAFT_02529 at 105.739 kb on + strand, within H281DRAFT_02529 at 105.880 kb on + strand, within H281DRAFT_02529 at 105.881 kb on - strand, within H281DRAFT_02529 at 106.063 kb on + strand at 106.072 kb on + strand at 106.073 kb on - strand at 106.220 kb on + strand, within H281DRAFT_02530 at 106.251 kb on - strand, within H281DRAFT_02530 at 106.428 kb on + strand, within H281DRAFT_02530 at 106.429 kb on - strand, within H281DRAFT_02530 at 107.005 kb on + strand, within H281DRAFT_02531 at 107.830 kb on + strand, within H281DRAFT_02532
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 105,209 + +0.1 105,301 + H281DRAFT_02529 0.11 +0.3 105,344 - H281DRAFT_02529 0.16 -0.6 105,347 - H281DRAFT_02529 0.17 +0.4 105,739 + H281DRAFT_02529 0.65 -0.3 105,880 + H281DRAFT_02529 0.82 +0.0 105,881 - H281DRAFT_02529 0.83 -0.1 106,063 + +0.4 106,072 + -1.3 106,073 - -2.0 106,220 + H281DRAFT_02530 0.19 -0.6 106,251 - H281DRAFT_02530 0.22 -3.3 106,428 + H281DRAFT_02530 0.45 -1.8 106,429 - H281DRAFT_02530 0.45 -5.1 107,005 + H281DRAFT_02531 0.17 +0.8 107,830 + H281DRAFT_02532 0.47 -0.5
Or see this region's nucleotide sequence