Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02259 and H281DRAFT_02260 are separated by 58 nucleotides H281DRAFT_02260 and H281DRAFT_02261 are separated by 16 nucleotides H281DRAFT_02261 and H281DRAFT_02262 are separated by 202 nucleotides H281DRAFT_02262 and H281DRAFT_02263 overlap by 8 nucleotides
H281DRAFT_02259: H281DRAFT_02259 - adenine-specific DNA-methyltransferase, at 405,043 to 406,380
_02259
H281DRAFT_02260: H281DRAFT_02260 - Zn-dependent peptidase ImmA, M78 family, at 406,439 to 407,647
_02260
H281DRAFT_02261: H281DRAFT_02261 - hypothetical protein, at 407,664 to 408,299
_02261
H281DRAFT_02262: H281DRAFT_02262 - hypothetical protein, at 408,502 to 408,633
_02262
H281DRAFT_02263: H281DRAFT_02263 - hypothetical protein, at 408,626 to 409,114
_02263
Position (kb) 406
407
408 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 406.277 kb on + strand at 406.278 kb on - strand at 406.278 kb on - strand at 406.410 kb on - strand at 406.444 kb on + strand at 406.445 kb on - strand at 406.445 kb on - strand at 406.445 kb on - strand at 406.445 kb on - strand at 406.450 kb on + strand at 406.450 kb on + strand at 406.450 kb on + strand at 406.451 kb on - strand at 407.653 kb on - strand at 407.666 kb on - strand at 407.670 kb on - strand at 407.670 kb on - strand at 407.670 kb on - strand at 407.857 kb on - strand, within H281DRAFT_02261 at 407.952 kb on - strand, within H281DRAFT_02261 at 408.064 kb on + strand, within H281DRAFT_02261 at 408.064 kb on + strand, within H281DRAFT_02261 at 408.064 kb on + strand, within H281DRAFT_02261 at 408.065 kb on - strand, within H281DRAFT_02261 at 408.420 kb on + strand at 408.420 kb on + strand at 408.420 kb on + strand at 408.420 kb on + strand at 408.420 kb on + strand at 408.421 kb on - strand at 408.421 kb on - strand at 408.421 kb on - strand at 408.421 kb on - strand at 408.421 kb on - strand at 408.510 kb on + strand at 408.526 kb on + strand, within H281DRAFT_02262 at 408.527 kb on - strand, within H281DRAFT_02262 at 408.557 kb on + strand, within H281DRAFT_02262 at 408.557 kb on + strand, within H281DRAFT_02262 at 408.590 kb on - strand, within H281DRAFT_02262
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 406,277 + -0.9 406,278 - -0.2 406,278 - -0.9 406,410 - -0.3 406,444 + -3.1 406,445 - +1.0 406,445 - +0.3 406,445 - -0.6 406,445 - -0.4 406,450 + +0.8 406,450 + +0.3 406,450 + -1.1 406,451 - -0.1 407,653 - +0.2 407,666 - -1.0 407,670 - +1.1 407,670 - -0.1 407,670 - +0.3 407,857 - H281DRAFT_02261 0.30 -1.2 407,952 - H281DRAFT_02261 0.45 +0.4 408,064 + H281DRAFT_02261 0.63 +0.2 408,064 + H281DRAFT_02261 0.63 -0.5 408,064 + H281DRAFT_02261 0.63 -1.6 408,065 - H281DRAFT_02261 0.63 -0.4 408,420 + -0.7 408,420 + +2.1 408,420 + -0.1 408,420 + -0.6 408,420 + +0.3 408,421 - +0.4 408,421 - -0.2 408,421 - -0.6 408,421 - +0.4 408,421 - -1.0 408,510 + -0.2 408,526 + H281DRAFT_02262 0.18 +0.5 408,527 - H281DRAFT_02262 0.19 +0.2 408,557 + H281DRAFT_02262 0.42 -0.8 408,557 + H281DRAFT_02262 0.42 -1.3 408,590 - H281DRAFT_02262 0.67 +0.9
Or see this region's nucleotide sequence