Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02196

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02194 and H281DRAFT_02195 are separated by 211 nucleotidesH281DRAFT_02195 and H281DRAFT_02196 are separated by 68 nucleotidesH281DRAFT_02196 and H281DRAFT_02197 are separated by 480 nucleotides H281DRAFT_02194: H281DRAFT_02194 - L-glyceraldehyde 3-phosphate reductase, at 335,585 to 336,628 _02194 H281DRAFT_02195: H281DRAFT_02195 - Protein of unknown function (DUF3185), at 336,840 to 337,046 _02195 H281DRAFT_02196: H281DRAFT_02196 - phytanoyl-CoA hydroxylase, at 337,115 to 337,876 _02196 H281DRAFT_02197: H281DRAFT_02197 - hypothetical protein, at 338,357 to 338,728 _02197 Position (kb) 337 338Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 336.135 kb on + strand, within H281DRAFT_02194at 336.135 kb on + strand, within H281DRAFT_02194at 336.135 kb on + strand, within H281DRAFT_02194at 336.136 kb on - strand, within H281DRAFT_02194at 336.136 kb on - strand, within H281DRAFT_02194at 336.234 kb on + strand, within H281DRAFT_02194at 336.235 kb on - strand, within H281DRAFT_02194at 336.282 kb on + strand, within H281DRAFT_02194at 336.282 kb on + strand, within H281DRAFT_02194at 336.282 kb on + strand, within H281DRAFT_02194at 336.282 kb on + strand, within H281DRAFT_02194at 336.282 kb on + strand, within H281DRAFT_02194at 336.283 kb on - strand, within H281DRAFT_02194at 336.283 kb on - strand, within H281DRAFT_02194at 336.283 kb on - strand, within H281DRAFT_02194at 336.283 kb on - strand, within H281DRAFT_02194at 336.420 kb on + strand, within H281DRAFT_02194at 336.432 kb on + strand, within H281DRAFT_02194at 336.432 kb on + strand, within H281DRAFT_02194at 336.432 kb on + strand, within H281DRAFT_02194at 336.433 kb on - strand, within H281DRAFT_02194at 336.515 kb on - strand, within H281DRAFT_02194at 336.586 kb on - strandat 336.586 kb on - strandat 336.601 kb on - strandat 336.621 kb on + strandat 336.622 kb on - strandat 336.718 kb on + strandat 336.718 kb on + strandat 336.718 kb on + strandat 336.718 kb on + strandat 336.718 kb on + strandat 336.719 kb on - strandat 336.807 kb on - strandat 336.807 kb on - strandat 336.827 kb on + strandat 336.828 kb on - strandat 336.837 kb on + strandat 336.837 kb on + strandat 336.837 kb on + strandat 336.837 kb on + strandat 336.837 kb on + strandat 336.838 kb on - strandat 336.838 kb on - strandat 336.838 kb on - strandat 336.892 kb on - strand, within H281DRAFT_02195at 336.983 kb on - strand, within H281DRAFT_02195at 337.182 kb on + strandat 337.183 kb on - strandat 337.188 kb on + strandat 337.188 kb on + strandat 337.188 kb on + strandat 337.243 kb on + strand, within H281DRAFT_02196at 337.244 kb on - strand, within H281DRAFT_02196at 337.244 kb on - strand, within H281DRAFT_02196at 337.476 kb on + strand, within H281DRAFT_02196at 337.578 kb on + strand, within H281DRAFT_02196at 337.644 kb on + strand, within H281DRAFT_02196at 337.645 kb on - strand, within H281DRAFT_02196at 337.915 kb on - strandat 337.932 kb on - strandat 338.048 kb on + strandat 338.048 kb on + strandat 338.049 kb on - strandat 338.125 kb on - strandat 338.158 kb on + strandat 338.158 kb on + strandat 338.159 kb on - strandat 338.159 kb on - strandat 338.345 kb on - strandat 338.345 kb on - strandat 338.345 kb on - strandat 338.345 kb on - strandat 338.362 kb on + strandat 338.362 kb on + strandat 338.362 kb on + strandat 338.362 kb on + strandat 338.362 kb on + strandat 338.363 kb on - strandat 338.363 kb on - strandat 338.363 kb on - strandat 338.363 kb on - strandat 338.363 kb on - strandat 338.363 kb on - strandat 338.427 kb on + strand, within H281DRAFT_02197at 338.428 kb on - strand, within H281DRAFT_02197at 338.524 kb on + strand, within H281DRAFT_02197at 338.524 kb on + strand, within H281DRAFT_02197at 338.524 kb on + strand, within H281DRAFT_02197at 338.524 kb on + strand, within H281DRAFT_02197at 338.524 kb on + strand, within H281DRAFT_02197at 338.525 kb on - strand, within H281DRAFT_02197at 338.525 kb on - strand, within H281DRAFT_02197at 338.525 kb on - strand, within H281DRAFT_02197at 338.525 kb on - strand, within H281DRAFT_02197at 338.525 kb on - strand, within H281DRAFT_02197at 338.618 kb on - strand, within H281DRAFT_02197at 338.784 kb on + strandat 338.785 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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336,135 + H281DRAFT_02194 0.53 +2.5
336,135 + H281DRAFT_02194 0.53 +0.4
336,135 + H281DRAFT_02194 0.53 -0.7
336,136 - H281DRAFT_02194 0.53 -0.7
336,136 - H281DRAFT_02194 0.53 +0.2
336,234 + H281DRAFT_02194 0.62 -0.0
336,235 - H281DRAFT_02194 0.62 -0.9
336,282 + H281DRAFT_02194 0.67 -0.4
336,282 + H281DRAFT_02194 0.67 +1.4
336,282 + H281DRAFT_02194 0.67 +0.2
336,282 + H281DRAFT_02194 0.67 -0.4
336,282 + H281DRAFT_02194 0.67 +0.5
336,283 - H281DRAFT_02194 0.67 -0.2
336,283 - H281DRAFT_02194 0.67 +1.4
336,283 - H281DRAFT_02194 0.67 +0.1
336,283 - H281DRAFT_02194 0.67 +0.3
336,420 + H281DRAFT_02194 0.80 -0.3
336,432 + H281DRAFT_02194 0.81 -1.1
336,432 + H281DRAFT_02194 0.81 +0.6
336,432 + H281DRAFT_02194 0.81 +1.0
336,433 - H281DRAFT_02194 0.81 -0.6
336,515 - H281DRAFT_02194 0.89 +4.0
336,586 - -0.3
336,586 - +0.1
336,601 - -0.9
336,621 + -0.3
336,622 - +2.0
336,718 + -1.5
336,718 + -0.7
336,718 + +0.6
336,718 + +0.3
336,718 + -2.1
336,719 - -1.0
336,807 - -0.6
336,807 - +0.2
336,827 + -0.4
336,828 - -0.3
336,837 + +0.6
336,837 + +0.3
336,837 + +0.9
336,837 + -1.9
336,837 + -0.6
336,838 - -2.7
336,838 - +0.4
336,838 - -0.6
336,892 - H281DRAFT_02195 0.25 +1.4
336,983 - H281DRAFT_02195 0.69 -0.4
337,182 + -0.8
337,183 - -0.9
337,188 + -0.1
337,188 + -0.4
337,188 + -2.9
337,243 + H281DRAFT_02196 0.17 -2.3
337,244 - H281DRAFT_02196 0.17 -1.2
337,244 - H281DRAFT_02196 0.17 -1.1
337,476 + H281DRAFT_02196 0.47 -0.9
337,578 + H281DRAFT_02196 0.61 -1.3
337,644 + H281DRAFT_02196 0.69 -1.0
337,645 - H281DRAFT_02196 0.70 -1.1
337,915 - -0.3
337,932 - -0.6
338,048 + -0.8
338,048 + -1.5
338,049 - +0.0
338,125 - +0.2
338,158 + +0.1
338,158 + +0.4
338,159 - +0.3
338,159 - -0.6
338,345 - -1.9
338,345 - -0.4
338,345 - -0.4
338,345 - -0.9
338,362 + +0.1
338,362 + +0.6
338,362 + -0.5
338,362 + +0.3
338,362 + +0.5
338,363 - +0.9
338,363 - +0.0
338,363 - +0.4
338,363 - -1.2
338,363 - -0.2
338,363 - -0.0
338,427 + H281DRAFT_02197 0.19 +0.3
338,428 - H281DRAFT_02197 0.19 +2.0
338,524 + H281DRAFT_02197 0.45 +0.2
338,524 + H281DRAFT_02197 0.45 +0.8
338,524 + H281DRAFT_02197 0.45 -0.2
338,524 + H281DRAFT_02197 0.45 +0.1
338,524 + H281DRAFT_02197 0.45 -1.8
338,525 - H281DRAFT_02197 0.45 +0.5
338,525 - H281DRAFT_02197 0.45 -0.6
338,525 - H281DRAFT_02197 0.45 -1.3
338,525 - H281DRAFT_02197 0.45 -0.2
338,525 - H281DRAFT_02197 0.45 +1.4
338,618 - H281DRAFT_02197 0.70 -1.4
338,784 + -1.6
338,785 + -0.6

Or see this region's nucleotide sequence