Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02035 and H281DRAFT_02036 are separated by 247 nucleotides H281DRAFT_02036 and H281DRAFT_02037 are separated by 143 nucleotides H281DRAFT_02037 and H281DRAFT_02038 are separated by 16 nucleotides
H281DRAFT_02035: H281DRAFT_02035 - hypothetical protein, at 156,827 to 157,534
_02035
H281DRAFT_02036: H281DRAFT_02036 - Thiol-disulfide isomerase or thioredoxin, at 157,782 to 158,315
_02036
H281DRAFT_02037: H281DRAFT_02037 - two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family, at 158,459 to 159,811
_02037
H281DRAFT_02038: H281DRAFT_02038 - two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB, at 159,828 to 161,837
_02038
Position (kb) 158
159
160 Strain fitness (log2 ratio) -2
-1
0
1 at 157.524 kb on + strand at 157.525 kb on - strand at 157.695 kb on + strand at 157.695 kb on + strand at 157.695 kb on + strand at 157.695 kb on + strand at 157.695 kb on + strand at 157.695 kb on + strand at 157.696 kb on - strand at 157.696 kb on - strand at 157.696 kb on - strand at 157.696 kb on - strand at 157.700 kb on + strand at 157.709 kb on + strand at 157.833 kb on + strand at 157.974 kb on + strand, within H281DRAFT_02036 at 157.974 kb on + strand, within H281DRAFT_02036 at 157.974 kb on + strand, within H281DRAFT_02036 at 157.974 kb on + strand, within H281DRAFT_02036 at 157.975 kb on - strand, within H281DRAFT_02036 at 157.975 kb on - strand, within H281DRAFT_02036 at 158.006 kb on + strand, within H281DRAFT_02036 at 158.006 kb on + strand, within H281DRAFT_02036 at 158.043 kb on + strand, within H281DRAFT_02036 at 158.043 kb on + strand, within H281DRAFT_02036 at 158.043 kb on + strand, within H281DRAFT_02036 at 158.043 kb on + strand, within H281DRAFT_02036 at 158.045 kb on + strand, within H281DRAFT_02036 at 158.060 kb on + strand, within H281DRAFT_02036 at 158.109 kb on + strand, within H281DRAFT_02036 at 158.109 kb on + strand, within H281DRAFT_02036 at 158.110 kb on - strand, within H281DRAFT_02036 at 158.122 kb on - strand at 158.250 kb on + strand, within H281DRAFT_02036 at 158.359 kb on + strand at 158.360 kb on - strand at 158.365 kb on + strand at 158.366 kb on - strand at 158.793 kb on + strand, within H281DRAFT_02037 at 158.895 kb on + strand, within H281DRAFT_02037 at 159.214 kb on + strand, within H281DRAFT_02037 at 159.253 kb on + strand, within H281DRAFT_02037 at 159.371 kb on - strand, within H281DRAFT_02037 at 159.510 kb on + strand, within H281DRAFT_02037 at 159.548 kb on - strand, within H281DRAFT_02037 at 159.783 kb on + strand at 159.783 kb on + strand at 159.783 kb on + strand at 159.783 kb on + strand at 159.783 kb on + strand at 159.783 kb on + strand at 159.784 kb on - strand at 159.784 kb on - strand at 159.784 kb on - strand at 159.784 kb on - strand at 159.784 kb on - strand at 159.784 kb on - strand at 159.784 kb on - strand at 159.784 kb on - strand at 159.784 kb on - strand at 159.784 kb on - strand at 159.900 kb on + strand at 159.900 kb on + strand at 159.900 kb on + strand at 159.900 kb on + strand at 159.901 kb on - strand at 159.901 kb on - strand at 160.723 kb on - strand, within H281DRAFT_02038 at 160.732 kb on + strand, within H281DRAFT_02038
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 157,524 + +0.2 157,525 - -0.0 157,695 + -0.7 157,695 + -0.1 157,695 + +1.4 157,695 + -1.3 157,695 + -0.1 157,695 + -0.3 157,696 - +0.6 157,696 - -0.6 157,696 - +0.8 157,696 - -0.3 157,700 + -0.4 157,709 + -0.4 157,833 + -2.0 157,974 + H281DRAFT_02036 0.36 +1.4 157,974 + H281DRAFT_02036 0.36 -1.5 157,974 + H281DRAFT_02036 0.36 -2.1 157,974 + H281DRAFT_02036 0.36 -2.4 157,975 - H281DRAFT_02036 0.36 -2.5 157,975 - H281DRAFT_02036 0.36 -0.1 158,006 + H281DRAFT_02036 0.42 -0.1 158,006 + H281DRAFT_02036 0.42 -0.6 158,043 + H281DRAFT_02036 0.49 -0.6 158,043 + H281DRAFT_02036 0.49 -0.9 158,043 + H281DRAFT_02036 0.49 -1.1 158,043 + H281DRAFT_02036 0.49 -0.9 158,045 + H281DRAFT_02036 0.49 -0.6 158,060 + H281DRAFT_02036 0.52 -1.1 158,109 + H281DRAFT_02036 0.61 -0.9 158,109 + H281DRAFT_02036 0.61 -0.9 158,110 - H281DRAFT_02036 0.61 -1.7 158,122 - -1.6 158,250 + H281DRAFT_02036 0.88 -0.9 158,359 + +0.8 158,360 - -0.1 158,365 + +0.3 158,366 - +1.2 158,793 + H281DRAFT_02037 0.25 -0.4 158,895 + H281DRAFT_02037 0.32 -1.5 159,214 + H281DRAFT_02037 0.56 -0.5 159,253 + H281DRAFT_02037 0.59 -0.1 159,371 - H281DRAFT_02037 0.67 +0.0 159,510 + H281DRAFT_02037 0.78 -0.8 159,548 - H281DRAFT_02037 0.80 -0.7 159,783 + -0.4 159,783 + -0.6 159,783 + -0.7 159,783 + -0.3 159,783 + +1.3 159,783 + +0.3 159,784 - -0.9 159,784 - +0.0 159,784 - +0.0 159,784 - -0.8 159,784 - -0.6 159,784 - -0.3 159,784 - +0.8 159,784 - -0.3 159,784 - +1.4 159,784 - +0.6 159,900 + +0.0 159,900 + -0.7 159,900 + -0.7 159,900 + -0.5 159,901 - +0.2 159,901 - +0.1 160,723 - H281DRAFT_02038 0.45 -0.3 160,732 + H281DRAFT_02038 0.45 +0.4
Or see this region's nucleotide sequence