Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01994

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01993 and H281DRAFT_01994 are separated by 43 nucleotidesH281DRAFT_01994 and H281DRAFT_01995 are separated by 73 nucleotidesH281DRAFT_01995 and H281DRAFT_01996 are separated by 326 nucleotides H281DRAFT_01993: H281DRAFT_01993 - cytochrome c oxidase subunit 1, at 110,727 to 112,340 _01993 H281DRAFT_01994: H281DRAFT_01994 - cytochrome c oxidase subunit 2, at 112,384 to 114,018 _01994 H281DRAFT_01995: H281DRAFT_01995 - Uncharacterized membrane protein, at 114,092 to 114,565 _01995 H281DRAFT_01996: H281DRAFT_01996 - malonyl-CoA O-methyltransferase, at 114,892 to 115,857 _01996 Position (kb) 112 113 114 115Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 111.470 kb on + strand, within H281DRAFT_01993at 111.471 kb on - strand, within H281DRAFT_01993at 111.547 kb on + strand, within H281DRAFT_01993at 111.547 kb on + strand, within H281DRAFT_01993at 111.547 kb on + strand, within H281DRAFT_01993at 111.548 kb on - strand, within H281DRAFT_01993at 111.578 kb on + strand, within H281DRAFT_01993at 111.579 kb on - strand, within H281DRAFT_01993at 111.579 kb on - strand, within H281DRAFT_01993at 111.579 kb on - strand, within H281DRAFT_01993at 111.586 kb on + strand, within H281DRAFT_01993at 111.587 kb on - strand, within H281DRAFT_01993at 111.701 kb on - strand, within H281DRAFT_01993at 111.883 kb on + strand, within H281DRAFT_01993at 111.883 kb on + strand, within H281DRAFT_01993at 111.884 kb on - strand, within H281DRAFT_01993at 112.213 kb on + strandat 112.214 kb on - strandat 112.220 kb on + strandat 112.335 kb on - strandat 112.361 kb on - strandat 112.465 kb on - strandat 112.468 kb on - strandat 112.468 kb on - strandat 112.468 kb on - strandat 112.468 kb on - strandat 112.679 kb on + strand, within H281DRAFT_01994at 112.909 kb on - strand, within H281DRAFT_01994at 112.940 kb on - strand, within H281DRAFT_01994at 112.953 kb on + strand, within H281DRAFT_01994at 112.953 kb on + strand, within H281DRAFT_01994at 112.953 kb on + strand, within H281DRAFT_01994at 112.954 kb on - strand, within H281DRAFT_01994at 112.954 kb on - strand, within H281DRAFT_01994at 113.105 kb on + strand, within H281DRAFT_01994at 113.105 kb on + strand, within H281DRAFT_01994at 113.105 kb on + strand, within H281DRAFT_01994at 113.106 kb on - strand, within H281DRAFT_01994at 113.142 kb on + strand, within H281DRAFT_01994at 113.142 kb on + strand, within H281DRAFT_01994at 113.142 kb on + strand, within H281DRAFT_01994at 113.143 kb on - strand, within H281DRAFT_01994at 113.143 kb on - strand, within H281DRAFT_01994at 113.143 kb on - strand, within H281DRAFT_01994at 113.144 kb on + strand, within H281DRAFT_01994at 113.145 kb on - strand, within H281DRAFT_01994at 113.375 kb on + strand, within H281DRAFT_01994at 113.376 kb on - strand, within H281DRAFT_01994at 113.465 kb on + strand, within H281DRAFT_01994at 113.465 kb on + strand, within H281DRAFT_01994at 113.465 kb on + strand, within H281DRAFT_01994at 113.466 kb on - strand, within H281DRAFT_01994at 113.466 kb on - strand, within H281DRAFT_01994at 113.466 kb on - strand, within H281DRAFT_01994at 113.466 kb on - strand, within H281DRAFT_01994at 113.469 kb on + strand, within H281DRAFT_01994at 113.469 kb on + strand, within H281DRAFT_01994at 113.558 kb on + strand, within H281DRAFT_01994at 113.558 kb on + strand, within H281DRAFT_01994at 113.558 kb on + strand, within H281DRAFT_01994at 113.559 kb on - strand, within H281DRAFT_01994at 113.772 kb on - strand, within H281DRAFT_01994at 113.840 kb on + strand, within H281DRAFT_01994at 113.840 kb on + strand, within H281DRAFT_01994at 113.841 kb on - strand, within H281DRAFT_01994at 113.994 kb on + strandat 113.995 kb on - strandat 114.112 kb on + strandat 114.113 kb on - strandat 114.113 kb on - strandat 114.113 kb on - strandat 114.291 kb on - strand, within H281DRAFT_01995at 114.291 kb on - strand, within H281DRAFT_01995at 114.291 kb on - strand, within H281DRAFT_01995at 114.345 kb on + strand, within H281DRAFT_01995at 114.345 kb on + strand, within H281DRAFT_01995at 114.345 kb on + strand, within H281DRAFT_01995at 114.345 kb on + strand, within H281DRAFT_01995at 114.346 kb on - strand, within H281DRAFT_01995at 114.346 kb on - strand, within H281DRAFT_01995at 114.346 kb on - strand, within H281DRAFT_01995at 114.346 kb on - strand, within H281DRAFT_01995at 114.346 kb on - strand, within H281DRAFT_01995at 114.346 kb on - strand, within H281DRAFT_01995at 114.465 kb on + strand, within H281DRAFT_01995at 114.465 kb on + strand, within H281DRAFT_01995at 114.465 kb on + strand, within H281DRAFT_01995at 114.465 kb on + strand, within H281DRAFT_01995at 114.466 kb on - strand, within H281DRAFT_01995at 114.466 kb on - strand, within H281DRAFT_01995at 114.466 kb on - strand, within H281DRAFT_01995at 114.466 kb on - strand, within H281DRAFT_01995at 114.466 kb on - strand, within H281DRAFT_01995at 114.466 kb on - strand, within H281DRAFT_01995at 114.648 kb on - strandat 114.751 kb on - strandat 114.869 kb on + strandat 114.869 kb on + strandat 114.870 kb on - strandat 114.870 kb on - strandat 114.870 kb on - strandat 114.870 kb on - strandat 114.885 kb on + strandat 114.886 kb on - strandat 114.886 kb on - strandat 114.886 kb on - strandat 114.886 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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111,470 + H281DRAFT_01993 0.46 -2.5
111,471 - H281DRAFT_01993 0.46 -1.9
111,547 + H281DRAFT_01993 0.51 -0.4
111,547 + H281DRAFT_01993 0.51 -1.5
111,547 + H281DRAFT_01993 0.51 -1.8
111,548 - H281DRAFT_01993 0.51 -1.7
111,578 + H281DRAFT_01993 0.53 -2.1
111,579 - H281DRAFT_01993 0.53 -1.0
111,579 - H281DRAFT_01993 0.53 -2.8
111,579 - H281DRAFT_01993 0.53 -1.0
111,586 + H281DRAFT_01993 0.53 -2.0
111,587 - H281DRAFT_01993 0.53 -0.6
111,701 - H281DRAFT_01993 0.60 -2.0
111,883 + H281DRAFT_01993 0.72 +0.4
111,883 + H281DRAFT_01993 0.72 -2.1
111,884 - H281DRAFT_01993 0.72 -0.6
112,213 + -2.4
112,214 - -0.5
112,220 + -1.6
112,335 - +0.7
112,361 - -0.1
112,465 - +0.2
112,468 - +1.0
112,468 - -0.2
112,468 - -0.7
112,468 - -0.6
112,679 + H281DRAFT_01994 0.18 -2.1
112,909 - H281DRAFT_01994 0.32 -0.1
112,940 - H281DRAFT_01994 0.34 -1.1
112,953 + H281DRAFT_01994 0.35 -1.1
112,953 + H281DRAFT_01994 0.35 -1.7
112,953 + H281DRAFT_01994 0.35 -1.7
112,954 - H281DRAFT_01994 0.35 -0.4
112,954 - H281DRAFT_01994 0.35 -2.7
113,105 + H281DRAFT_01994 0.44 -0.8
113,105 + H281DRAFT_01994 0.44 -1.1
113,105 + H281DRAFT_01994 0.44 -3.5
113,106 - H281DRAFT_01994 0.44 -1.0
113,142 + H281DRAFT_01994 0.46 -2.7
113,142 + H281DRAFT_01994 0.46 -3.0
113,142 + H281DRAFT_01994 0.46 -2.5
113,143 - H281DRAFT_01994 0.46 +0.1
113,143 - H281DRAFT_01994 0.46 -1.1
113,143 - H281DRAFT_01994 0.46 -0.9
113,144 + H281DRAFT_01994 0.46 -2.0
113,145 - H281DRAFT_01994 0.47 +1.4
113,375 + H281DRAFT_01994 0.61 -1.7
113,376 - H281DRAFT_01994 0.61 +0.4
113,465 + H281DRAFT_01994 0.66 -2.4
113,465 + H281DRAFT_01994 0.66 -1.4
113,465 + H281DRAFT_01994 0.66 -3.8
113,466 - H281DRAFT_01994 0.66 -2.9
113,466 - H281DRAFT_01994 0.66 -1.1
113,466 - H281DRAFT_01994 0.66 -4.0
113,466 - H281DRAFT_01994 0.66 -3.5
113,469 + H281DRAFT_01994 0.66 -1.1
113,469 + H281DRAFT_01994 0.66 +0.0
113,558 + H281DRAFT_01994 0.72 -3.5
113,558 + H281DRAFT_01994 0.72 -1.3
113,558 + H281DRAFT_01994 0.72 -3.1
113,559 - H281DRAFT_01994 0.72 -1.7
113,772 - H281DRAFT_01994 0.85 -1.1
113,840 + H281DRAFT_01994 0.89 -1.4
113,840 + H281DRAFT_01994 0.89 -1.4
113,841 - H281DRAFT_01994 0.89 -0.7
113,994 + -1.4
113,995 - +0.4
114,112 + +0.4
114,113 - -0.1
114,113 - -1.7
114,113 - +0.1
114,291 - H281DRAFT_01995 0.42 +0.8
114,291 - H281DRAFT_01995 0.42 +0.2
114,291 - H281DRAFT_01995 0.42 +0.8
114,345 + H281DRAFT_01995 0.53 -3.5
114,345 + H281DRAFT_01995 0.53 -1.4
114,345 + H281DRAFT_01995 0.53 -3.0
114,345 + H281DRAFT_01995 0.53 -3.0
114,346 - H281DRAFT_01995 0.54 +0.2
114,346 - H281DRAFT_01995 0.54 -0.1
114,346 - H281DRAFT_01995 0.54 -0.6
114,346 - H281DRAFT_01995 0.54 +1.1
114,346 - H281DRAFT_01995 0.54 +0.5
114,346 - H281DRAFT_01995 0.54 -0.3
114,465 + H281DRAFT_01995 0.79 -2.9
114,465 + H281DRAFT_01995 0.79 -2.4
114,465 + H281DRAFT_01995 0.79 -3.1
114,465 + H281DRAFT_01995 0.79 -1.7
114,466 - H281DRAFT_01995 0.79 +0.2
114,466 - H281DRAFT_01995 0.79 -0.0
114,466 - H281DRAFT_01995 0.79 -0.6
114,466 - H281DRAFT_01995 0.79 +1.9
114,466 - H281DRAFT_01995 0.79 +0.1
114,466 - H281DRAFT_01995 0.79 -0.9
114,648 - -0.7
114,751 - +2.5
114,869 + +3.8
114,869 + -0.3
114,870 - +0.4
114,870 - +0.7
114,870 - +0.1
114,870 - -0.1
114,885 + +0.4
114,886 - +1.4
114,886 - -0.1
114,886 - -1.7
114,886 - +0.3

Or see this region's nucleotide sequence