Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01773

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01771 and H281DRAFT_01772 are separated by 43 nucleotidesH281DRAFT_01772 and H281DRAFT_01773 are separated by 193 nucleotidesH281DRAFT_01773 and H281DRAFT_01774 are separated by 136 nucleotides H281DRAFT_01771: H281DRAFT_01771 - Pimeloyl-ACP methyl ester carboxylesterase, at 667,163 to 668,482 _01771 H281DRAFT_01772: H281DRAFT_01772 - Predicted periplasmic or secreted lipoprotein, at 668,526 to 668,885 _01772 H281DRAFT_01773: H281DRAFT_01773 - PAS domain S-box-containing protein, at 669,079 to 675,045 _01773 H281DRAFT_01774: H281DRAFT_01774 - Enoyl-CoA hydratase/carnithine racemase, at 675,182 to 676,021 _01774 Position (kb) 669 670 671 672 673 674 675 676Strain fitness (log2 ratio) -2 -1 0 1 2at 668.177 kb on - strand, within H281DRAFT_01771at 668.378 kb on - strandat 668.928 kb on + strandat 668.929 kb on - strandat 668.951 kb on - strandat 668.951 kb on - strandat 670.147 kb on + strand, within H281DRAFT_01773at 670.148 kb on - strand, within H281DRAFT_01773at 670.148 kb on - strand, within H281DRAFT_01773at 670.148 kb on - strand, within H281DRAFT_01773at 670.148 kb on - strand, within H281DRAFT_01773at 670.542 kb on - strand, within H281DRAFT_01773at 671.098 kb on - strand, within H281DRAFT_01773at 671.230 kb on - strand, within H281DRAFT_01773at 671.304 kb on - strand, within H281DRAFT_01773at 671.304 kb on - strand, within H281DRAFT_01773at 671.307 kb on + strand, within H281DRAFT_01773at 671.421 kb on - strand, within H281DRAFT_01773at 672.490 kb on - strand, within H281DRAFT_01773at 672.587 kb on + strand, within H281DRAFT_01773at 672.590 kb on - strand, within H281DRAFT_01773at 673.596 kb on - strand, within H281DRAFT_01773at 673.747 kb on + strand, within H281DRAFT_01773at 673.965 kb on - strand, within H281DRAFT_01773at 674.075 kb on + strand, within H281DRAFT_01773at 674.466 kb on - strandat 674.962 kb on - strandat 675.106 kb on - strandat 676.009 kb on + strandat 676.040 kb on + strandat 676.042 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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668,177 - H281DRAFT_01771 0.77 +0.9
668,378 - +1.2
668,928 + +0.5
668,929 - +0.8
668,951 - -0.4
668,951 - -0.2
670,147 + H281DRAFT_01773 0.18 +0.1
670,148 - H281DRAFT_01773 0.18 +1.3
670,148 - H281DRAFT_01773 0.18 +0.1
670,148 - H281DRAFT_01773 0.18 +0.3
670,148 - H281DRAFT_01773 0.18 -0.3
670,542 - H281DRAFT_01773 0.25 -1.7
671,098 - H281DRAFT_01773 0.34 +0.3
671,230 - H281DRAFT_01773 0.36 +0.3
671,304 - H281DRAFT_01773 0.37 -0.2
671,304 - H281DRAFT_01773 0.37 -0.4
671,307 + H281DRAFT_01773 0.37 +0.5
671,421 - H281DRAFT_01773 0.39 -1.2
672,490 - H281DRAFT_01773 0.57 -1.0
672,587 + H281DRAFT_01773 0.59 +2.3
672,590 - H281DRAFT_01773 0.59 -0.2
673,596 - H281DRAFT_01773 0.76 -0.6
673,747 + H281DRAFT_01773 0.78 -0.8
673,965 - H281DRAFT_01773 0.82 +0.0
674,075 + H281DRAFT_01773 0.84 -0.1
674,466 - +0.5
674,962 - -1.8
675,106 - -0.2
676,009 + -0.9
676,040 + +0.0
676,042 + -0.4

Or see this region's nucleotide sequence