Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01722 and H281DRAFT_01723 are separated by 175 nucleotides H281DRAFT_01723 and H281DRAFT_01724 overlap by 4 nucleotides H281DRAFT_01724 and H281DRAFT_01725 are separated by 176 nucleotides
H281DRAFT_01722: H281DRAFT_01722 - Sugar lactone lactonase YvrE, at 611,566 to 612,798
_01722
H281DRAFT_01723: H281DRAFT_01723 - ParD-like antitoxin of type II toxin-antitoxin system, at 612,974 to 613,186
_01723
H281DRAFT_01724: H281DRAFT_01724 - methionine aminopeptidase, type I, at 613,183 to 613,950
_01724
H281DRAFT_01725: H281DRAFT_01725 - ADP-heptose:LPS heptosyltransferase, at 614,127 to 615,296
_01725
Position (kb) 612
613
614 Strain fitness (log2 ratio) -1
0
1
2 at 612.398 kb on - strand, within H281DRAFT_01722 at 612.769 kb on - strand at 612.961 kb on - strand at 612.989 kb on - strand at 613.278 kb on + strand, within H281DRAFT_01724 at 613.312 kb on - strand, within H281DRAFT_01724 at 613.486 kb on + strand, within H281DRAFT_01724 at 613.510 kb on + strand, within H281DRAFT_01724 at 613.527 kb on - strand, within H281DRAFT_01724 at 613.539 kb on + strand, within H281DRAFT_01724 at 613.539 kb on + strand, within H281DRAFT_01724 at 613.539 kb on + strand, within H281DRAFT_01724 at 613.561 kb on + strand, within H281DRAFT_01724 at 613.657 kb on + strand, within H281DRAFT_01724 at 613.908 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 612,398 - H281DRAFT_01722 0.67 -1.0 612,769 - -0.2 612,961 - +0.2 612,989 - -1.5 613,278 + H281DRAFT_01724 0.12 -0.5 613,312 - H281DRAFT_01724 0.17 +0.0 613,486 + H281DRAFT_01724 0.39 -0.4 613,510 + H281DRAFT_01724 0.43 -0.2 613,527 - H281DRAFT_01724 0.45 -0.1 613,539 + H281DRAFT_01724 0.46 -1.4 613,539 + H281DRAFT_01724 0.46 -0.0 613,539 + H281DRAFT_01724 0.46 -0.8 613,561 + H281DRAFT_01724 0.49 -0.1 613,657 + H281DRAFT_01724 0.62 +2.5 613,908 - +0.8
Or see this region's nucleotide sequence