Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01619

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01618 and H281DRAFT_01619 are separated by 297 nucleotidesH281DRAFT_01619 and H281DRAFT_01620 are separated by 166 nucleotidesH281DRAFT_01620 and H281DRAFT_01621 are separated by 36 nucleotides H281DRAFT_01618: H281DRAFT_01618 - Outer membrane protein (porin), at 498,992 to 500,143 _01618 H281DRAFT_01619: H281DRAFT_01619 - hypothetical protein, at 500,441 to 500,854 _01619 H281DRAFT_01620: H281DRAFT_01620 - LexA-binding, inner membrane-associated putative hydrolase, at 501,021 to 501,539 _01620 H281DRAFT_01621: H281DRAFT_01621 - transcriptional regulator, AraC family, at 501,576 to 502,424 _01621 Position (kb) 500 501Strain fitness (log2 ratio) -2 -1 0 1 2 3at 499.481 kb on + strand, within H281DRAFT_01618at 499.481 kb on + strand, within H281DRAFT_01618at 499.508 kb on + strand, within H281DRAFT_01618at 499.509 kb on - strand, within H281DRAFT_01618at 499.571 kb on + strand, within H281DRAFT_01618at 499.571 kb on + strand, within H281DRAFT_01618at 499.604 kb on + strand, within H281DRAFT_01618at 499.605 kb on - strand, within H281DRAFT_01618at 499.700 kb on + strand, within H281DRAFT_01618at 499.701 kb on - strand, within H281DRAFT_01618at 499.701 kb on - strand, within H281DRAFT_01618at 499.701 kb on - strandat 499.701 kb on - strand, within H281DRAFT_01618at 499.718 kb on + strand, within H281DRAFT_01618at 499.718 kb on + strand, within H281DRAFT_01618at 499.759 kb on + strand, within H281DRAFT_01618at 499.759 kb on + strand, within H281DRAFT_01618at 499.844 kb on + strand, within H281DRAFT_01618at 499.844 kb on + strand, within H281DRAFT_01618at 499.845 kb on - strand, within H281DRAFT_01618at 499.899 kb on - strand, within H281DRAFT_01618at 499.957 kb on + strand, within H281DRAFT_01618at 499.957 kb on + strand, within H281DRAFT_01618at 499.958 kb on - strand, within H281DRAFT_01618at 499.980 kb on - strand, within H281DRAFT_01618at 500.022 kb on - strand, within H281DRAFT_01618at 500.022 kb on - strand, within H281DRAFT_01618at 500.141 kb on + strandat 500.173 kb on + strandat 500.251 kb on + strandat 500.606 kb on + strand, within H281DRAFT_01619at 500.606 kb on + strand, within H281DRAFT_01619at 500.607 kb on - strand, within H281DRAFT_01619at 500.607 kb on - strand, within H281DRAFT_01619at 500.634 kb on - strand, within H281DRAFT_01619at 500.732 kb on + strand, within H281DRAFT_01619at 500.901 kb on - strandat 501.121 kb on - strand, within H281DRAFT_01620at 501.121 kb on - strand, within H281DRAFT_01620at 501.303 kb on + strand, within H281DRAFT_01620at 501.304 kb on - strand, within H281DRAFT_01620at 501.511 kb on + strandat 501.512 kb on - strandat 501.552 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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499,481 + H281DRAFT_01618 0.42 -0.8
499,481 + H281DRAFT_01618 0.42 -0.0
499,508 + H281DRAFT_01618 0.45 -1.4
499,509 - H281DRAFT_01618 0.45 +0.8
499,571 + H281DRAFT_01618 0.50 -0.6
499,571 + H281DRAFT_01618 0.50 -1.0
499,604 + H281DRAFT_01618 0.53 -0.1
499,605 - H281DRAFT_01618 0.53 -0.3
499,700 + H281DRAFT_01618 0.61 -0.2
499,701 - H281DRAFT_01618 0.62 -0.9
499,701 - H281DRAFT_01618 0.62 -1.9
499,701 - +1.0
499,701 - H281DRAFT_01618 0.62 +0.9
499,718 + H281DRAFT_01618 0.63 +1.5
499,718 + H281DRAFT_01618 0.63 +0.3
499,759 + H281DRAFT_01618 0.67 -0.8
499,759 + H281DRAFT_01618 0.67 +0.4
499,844 + H281DRAFT_01618 0.74 -0.5
499,844 + H281DRAFT_01618 0.74 -0.1
499,845 - H281DRAFT_01618 0.74 -0.7
499,899 - H281DRAFT_01618 0.79 -0.4
499,957 + H281DRAFT_01618 0.84 +1.0
499,957 + H281DRAFT_01618 0.84 +0.3
499,958 - H281DRAFT_01618 0.84 -0.1
499,980 - H281DRAFT_01618 0.86 +0.9
500,022 - H281DRAFT_01618 0.89 +0.6
500,022 - H281DRAFT_01618 0.89 -0.4
500,141 + +0.2
500,173 + -0.7
500,251 + -0.0
500,606 + H281DRAFT_01619 0.40 -0.5
500,606 + H281DRAFT_01619 0.40 +0.1
500,607 - H281DRAFT_01619 0.40 +0.1
500,607 - H281DRAFT_01619 0.40 +0.1
500,634 - H281DRAFT_01619 0.47 -0.4
500,732 + H281DRAFT_01619 0.70 +0.2
500,901 - -0.1
501,121 - H281DRAFT_01620 0.19 -0.6
501,121 - H281DRAFT_01620 0.19 -1.0
501,303 + H281DRAFT_01620 0.54 +3.1
501,304 - H281DRAFT_01620 0.55 -0.0
501,511 + -0.0
501,512 - +1.1
501,552 + -0.0

Or see this region's nucleotide sequence