Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01573 and H281DRAFT_01574 are separated by 63 nucleotides H281DRAFT_01574 and H281DRAFT_01575 are separated by 282 nucleotides
H281DRAFT_01573: H281DRAFT_01573 - Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains, at 448,431 to 449,297
_01573
H281DRAFT_01574: H281DRAFT_01574 - CubicO group peptidase, beta-lactamase class C family, at 449,361 to 450,674
_01574
H281DRAFT_01575: H281DRAFT_01575 - transcriptional regulator, LysR family, at 450,957 to 451,889
_01575
Position (kb) 449
450
451 Strain fitness (log2 ratio) -1
0
1
2
3 at 448.395 kb on + strand at 448.630 kb on - strand, within H281DRAFT_01573 at 449.319 kb on + strand at 449.320 kb on - strand at 449.558 kb on + strand, within H281DRAFT_01574 at 449.707 kb on - strand, within H281DRAFT_01574 at 449.726 kb on - strand at 449.765 kb on - strand, within H281DRAFT_01574 at 450.148 kb on + strand, within H281DRAFT_01574 at 450.149 kb on - strand, within H281DRAFT_01574 at 450.326 kb on + strand, within H281DRAFT_01574 at 450.386 kb on + strand, within H281DRAFT_01574 at 450.790 kb on + strand at 450.790 kb on + strand at 450.791 kb on - strand at 450.807 kb on + strand at 450.941 kb on - strand at 450.941 kb on - strand at 450.943 kb on + strand at 450.943 kb on + strand at 450.944 kb on - strand at 450.944 kb on - strand at 451.009 kb on + strand at 451.048 kb on + strand at 451.049 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 448,395 + -0.4 448,630 - H281DRAFT_01573 0.23 -1.6 449,319 + +1.4 449,320 - -1.0 449,558 + H281DRAFT_01574 0.15 -1.1 449,707 - H281DRAFT_01574 0.26 +0.3 449,726 - +1.5 449,765 - H281DRAFT_01574 0.31 +1.5 450,148 + H281DRAFT_01574 0.60 +0.3 450,149 - H281DRAFT_01574 0.60 -0.3 450,326 + H281DRAFT_01574 0.73 -0.6 450,386 + H281DRAFT_01574 0.78 -0.4 450,790 + +0.3 450,790 + +0.5 450,791 - -0.1 450,807 + -1.1 450,941 - +0.1 450,941 - +3.6 450,943 + -0.4 450,943 + -0.0 450,944 - -0.1 450,944 - -0.1 451,009 + -1.0 451,048 + +0.6 451,049 - -0.5
Or see this region's nucleotide sequence