Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01381 and H281DRAFT_01382 are separated by 139 nucleotides H281DRAFT_01382 and H281DRAFT_01383 overlap by 4 nucleotides H281DRAFT_01383 and H281DRAFT_01384 overlap by 4 nucleotides
H281DRAFT_01381: H281DRAFT_01381 - Cellulose synthase subunit D, at 226,043 to 226,498
_01381
H281DRAFT_01382: H281DRAFT_01382 - Cellulose biosynthesis protein BcsR, at 226,638 to 227,627
_01382
H281DRAFT_01383: H281DRAFT_01383 - chromosome partitioning protein, at 227,624 to 228,412
_01383
H281DRAFT_01384: H281DRAFT_01384 - cellulose synthase (UDP-forming), at 228,409 to 230,613
_01384
Position (kb) 226
227
228 Strain fitness (log2 ratio) -2
-1
0
1
2 at 225.667 kb on + strand at 225.667 kb on + strand at 225.668 kb on - strand at 225.746 kb on + strand at 225.747 kb on - strand at 225.747 kb on - strand at 225.747 kb on - strand at 225.807 kb on + strand at 225.808 kb on - strand at 225.808 kb on - strand at 225.837 kb on + strand at 225.875 kb on + strand at 225.891 kb on - strand at 225.891 kb on - strand at 226.061 kb on + strand at 226.274 kb on + strand, within H281DRAFT_01381 at 226.275 kb on - strand, within H281DRAFT_01381 at 226.449 kb on - strand, within H281DRAFT_01381 at 226.596 kb on + strand at 226.596 kb on + strand at 226.596 kb on + strand at 226.597 kb on - strand at 226.612 kb on + strand at 226.613 kb on - strand at 226.620 kb on + strand at 226.666 kb on + strand at 226.698 kb on + strand at 227.154 kb on - strand, within H281DRAFT_01382 at 227.154 kb on - strand, within H281DRAFT_01382 at 227.985 kb on + strand, within H281DRAFT_01383 at 228.017 kb on + strand, within H281DRAFT_01383 at 228.083 kb on + strand, within H281DRAFT_01383 at 228.158 kb on + strand, within H281DRAFT_01383 at 228.159 kb on - strand, within H281DRAFT_01383 at 228.490 kb on - strand at 228.538 kb on + strand at 228.569 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 225,667 + +0.3 225,667 + -0.5 225,668 - +0.9 225,746 + +0.2 225,747 - -0.4 225,747 - -1.3 225,747 - +1.1 225,807 + +0.9 225,808 - -1.5 225,808 - -0.1 225,837 + -0.5 225,875 + +0.2 225,891 - -0.8 225,891 - +0.8 226,061 + +2.0 226,274 + H281DRAFT_01381 0.51 -1.0 226,275 - H281DRAFT_01381 0.51 -0.2 226,449 - H281DRAFT_01381 0.89 -0.5 226,596 + -0.3 226,596 + -0.4 226,596 + -0.3 226,597 - +1.0 226,612 + +2.4 226,613 - +0.0 226,620 + +0.3 226,666 + -0.3 226,698 + -0.3 227,154 - H281DRAFT_01382 0.52 -0.8 227,154 - H281DRAFT_01382 0.52 -2.1 227,985 + H281DRAFT_01383 0.46 +1.5 228,017 + H281DRAFT_01383 0.50 +0.9 228,083 + H281DRAFT_01383 0.58 +0.9 228,158 + H281DRAFT_01383 0.68 +0.6 228,159 - H281DRAFT_01383 0.68 -0.9 228,490 - +1.8 228,538 + +1.9 228,569 - +2.2
Or see this region's nucleotide sequence