Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01027 and H281DRAFT_01028 are separated by 66 nucleotides H281DRAFT_01028 and H281DRAFT_01029 overlap by 1 nucleotides H281DRAFT_01029 and H281DRAFT_01030 are separated by 5 nucleotides
H281DRAFT_01027: H281DRAFT_01027 - gamma-glutamyltranspeptidase / glutathione hydrolase, at 1,153,728 to 1,155,365
_01027
H281DRAFT_01028: H281DRAFT_01028 - peptide/nickel transport system permease protein, at 1,155,432 to 1,156,316
_01028
H281DRAFT_01029: H281DRAFT_01029 - peptide/nickel transport system permease protein, at 1,156,316 to 1,157,260
_01029
H281DRAFT_01030: H281DRAFT_01030 - peptide/nickel transport system substrate-binding protein, at 1,157,266 to 1,158,762
_01030
Position (kb) 1156
1157
1158 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1155.416 kb on + strand at 1155.417 kb on - strand at 1156.046 kb on - strand, within H281DRAFT_01028 at 1156.351 kb on - strand at 1156.351 kb on - strand at 1156.351 kb on - strand at 1156.351 kb on - strand at 1156.351 kb on - strand at 1156.761 kb on + strand, within H281DRAFT_01029 at 1156.761 kb on + strand, within H281DRAFT_01029 at 1156.762 kb on - strand, within H281DRAFT_01029 at 1157.367 kb on - strand at 1157.813 kb on + strand, within H281DRAFT_01030 at 1157.814 kb on - strand, within H281DRAFT_01030 at 1157.817 kb on - strand, within H281DRAFT_01030 at 1157.982 kb on - strand, within H281DRAFT_01030 at 1157.984 kb on + strand, within H281DRAFT_01030 at 1157.984 kb on + strand, within H281DRAFT_01030 at 1157.984 kb on + strand, within H281DRAFT_01030 at 1157.985 kb on - strand, within H281DRAFT_01030
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 1,155,416 + +0.3 1,155,417 - -0.9 1,156,046 - H281DRAFT_01028 0.69 +0.2 1,156,351 - +0.2 1,156,351 - -0.6 1,156,351 - +1.0 1,156,351 - -1.1 1,156,351 - +0.0 1,156,761 + H281DRAFT_01029 0.47 -0.3 1,156,761 + H281DRAFT_01029 0.47 +0.1 1,156,762 - H281DRAFT_01029 0.47 -2.7 1,157,367 - -0.4 1,157,813 + H281DRAFT_01030 0.37 +0.6 1,157,814 - H281DRAFT_01030 0.37 +0.1 1,157,817 - H281DRAFT_01030 0.37 -0.5 1,157,982 - H281DRAFT_01030 0.48 +0.4 1,157,984 + H281DRAFT_01030 0.48 +0.2 1,157,984 + H281DRAFT_01030 0.48 +1.2 1,157,984 + H281DRAFT_01030 0.48 +3.0 1,157,985 - H281DRAFT_01030 0.48 +1.7
Or see this region's nucleotide sequence