Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00871 and H281DRAFT_00872 overlap by 1 nucleotides H281DRAFT_00872 and H281DRAFT_00873 are separated by 180 nucleotides H281DRAFT_00873 and H281DRAFT_00874 are separated by 334 nucleotides
H281DRAFT_00871: H281DRAFT_00871 - hypothetical protein, at 963,178 to 965,727
_00871
H281DRAFT_00872: H281DRAFT_00872 - hypothetical protein, at 965,727 to 965,822
_00872
H281DRAFT_00873: H281DRAFT_00873 - hypothetical protein, at 966,003 to 966,494
_00873
H281DRAFT_00874: H281DRAFT_00874 - Bacteriophytochrome (light-regulated signal transduction histidine kinase), at 966,829 to 968,439
_00874
Position (kb) 966
967 Strain fitness (log2 ratio) -1
0
1
2 at 965.140 kb on + strand, within H281DRAFT_00871 at 965.359 kb on + strand, within H281DRAFT_00871 at 965.360 kb on - strand, within H281DRAFT_00871 at 965.816 kb on + strand at 965.816 kb on + strand at 965.820 kb on + strand at 965.820 kb on + strand at 965.820 kb on + strand at 965.821 kb on - strand at 965.859 kb on + strand at 965.859 kb on + strand at 965.860 kb on - strand at 965.860 kb on - strand at 965.965 kb on + strand at 965.966 kb on - strand at 965.966 kb on - strand at 966.152 kb on - strand, within H281DRAFT_00873 at 966.276 kb on + strand, within H281DRAFT_00873 at 966.277 kb on - strand, within H281DRAFT_00873 at 966.277 kb on - strand, within H281DRAFT_00873 at 966.277 kb on - strand, within H281DRAFT_00873 at 966.310 kb on + strand at 966.449 kb on + strand at 966.449 kb on + strand at 966.450 kb on - strand at 966.534 kb on + strand at 966.536 kb on + strand at 966.536 kb on + strand at 966.537 kb on - strand at 966.537 kb on - strand at 966.542 kb on - strand at 966.711 kb on + strand at 966.712 kb on - strand at 966.747 kb on - strand at 966.951 kb on + strand at 966.968 kb on - strand at 967.062 kb on + strand, within H281DRAFT_00874 at 967.062 kb on + strand, within H281DRAFT_00874 at 967.079 kb on + strand at 967.079 kb on + strand, within H281DRAFT_00874 at 967.080 kb on - strand, within H281DRAFT_00874 at 967.080 kb on - strand, within H281DRAFT_00874 at 967.080 kb on - strand, within H281DRAFT_00874 at 967.146 kb on + strand, within H281DRAFT_00874 at 967.147 kb on - strand, within H281DRAFT_00874 at 967.147 kb on - strand, within H281DRAFT_00874 at 967.187 kb on + strand, within H281DRAFT_00874 at 967.369 kb on + strand, within H281DRAFT_00874 at 967.369 kb on + strand, within H281DRAFT_00874 at 967.369 kb on + strand, within H281DRAFT_00874 at 967.370 kb on - strand, within H281DRAFT_00874
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 965,140 + H281DRAFT_00871 0.77 -0.1 965,359 + H281DRAFT_00871 0.86 +0.2 965,360 - H281DRAFT_00871 0.86 -0.1 965,816 + +2.0 965,816 + +1.1 965,820 + -0.2 965,820 + -1.0 965,820 + -1.5 965,821 - -0.2 965,859 + +2.6 965,859 + +0.2 965,860 - +1.0 965,860 - -1.2 965,965 + +0.3 965,966 - +2.4 965,966 - +0.1 966,152 - H281DRAFT_00873 0.30 +1.2 966,276 + H281DRAFT_00873 0.55 -0.2 966,277 - H281DRAFT_00873 0.56 +1.2 966,277 - H281DRAFT_00873 0.56 -0.6 966,277 - H281DRAFT_00873 0.56 +1.4 966,310 + -0.2 966,449 + -0.1 966,449 + -0.7 966,450 - -0.8 966,534 + +0.7 966,536 + +0.3 966,536 + +0.3 966,537 - +0.5 966,537 - +0.5 966,542 - -0.3 966,711 + -0.1 966,712 - -0.1 966,747 - -0.2 966,951 + -0.2 966,968 - -0.3 967,062 + H281DRAFT_00874 0.14 -0.3 967,062 + H281DRAFT_00874 0.14 +0.9 967,079 + +0.4 967,079 + H281DRAFT_00874 0.16 +0.9 967,080 - H281DRAFT_00874 0.16 +0.4 967,080 - H281DRAFT_00874 0.16 +0.0 967,080 - H281DRAFT_00874 0.16 +0.4 967,146 + H281DRAFT_00874 0.20 +0.4 967,147 - H281DRAFT_00874 0.20 +0.6 967,147 - H281DRAFT_00874 0.20 -0.0 967,187 + H281DRAFT_00874 0.22 +0.2 967,369 + H281DRAFT_00874 0.34 +0.7 967,369 + H281DRAFT_00874 0.34 -0.9 967,369 + H281DRAFT_00874 0.34 +0.6 967,370 - H281DRAFT_00874 0.34 -0.4
Or see this region's nucleotide sequence