Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00822

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_00820 and H281DRAFT_00821 overlap by 49 nucleotidesH281DRAFT_00821 and H281DRAFT_00822 are separated by 123 nucleotidesH281DRAFT_00822 and H281DRAFT_00823 are separated by 2 nucleotides H281DRAFT_00820: H281DRAFT_00820 - DNA-binding transcriptional regulator, MerR family, at 909,762 to 910,268 _00820 H281DRAFT_00821: H281DRAFT_00821 - 4-carboxymuconolactone decarboxylase, at 910,220 to 910,657 _00821 H281DRAFT_00822: H281DRAFT_00822 - multidrug resistance protein, MATE family, at 910,781 to 912,160 _00822 H281DRAFT_00823: H281DRAFT_00823 - 4-amino-4-deoxy-L-arabinose transferase, at 912,163 to 913,920 _00823 Position (kb) 910 911 912 913Strain fitness (log2 ratio) -2 -1 0 1 2at 909.827 kb on + strand, within H281DRAFT_00820at 909.838 kb on - strand, within H281DRAFT_00820at 909.840 kb on + strand, within H281DRAFT_00820at 910.114 kb on - strand, within H281DRAFT_00820at 910.116 kb on + strand, within H281DRAFT_00820at 910.117 kb on - strand, within H281DRAFT_00820at 910.366 kb on + strand, within H281DRAFT_00821at 910.367 kb on - strand, within H281DRAFT_00821at 910.370 kb on + strand, within H281DRAFT_00821at 910.370 kb on + strand, within H281DRAFT_00821at 910.370 kb on + strand, within H281DRAFT_00821at 910.371 kb on - strand, within H281DRAFT_00821at 910.465 kb on + strand, within H281DRAFT_00821at 910.535 kb on + strand, within H281DRAFT_00821at 910.535 kb on + strand, within H281DRAFT_00821at 910.535 kb on + strand, within H281DRAFT_00821at 910.535 kb on + strand, within H281DRAFT_00821at 910.536 kb on - strand, within H281DRAFT_00821at 911.001 kb on + strand, within H281DRAFT_00822at 911.002 kb on - strand, within H281DRAFT_00822at 911.031 kb on + strand, within H281DRAFT_00822at 911.032 kb on - strand, within H281DRAFT_00822at 911.032 kb on - strand, within H281DRAFT_00822at 911.157 kb on + strand, within H281DRAFT_00822at 911.317 kb on + strand, within H281DRAFT_00822at 911.319 kb on + strand, within H281DRAFT_00822at 911.319 kb on + strand, within H281DRAFT_00822at 911.319 kb on + strand, within H281DRAFT_00822at 911.319 kb on + strand, within H281DRAFT_00822at 911.320 kb on - strand, within H281DRAFT_00822at 911.320 kb on - strand, within H281DRAFT_00822at 911.407 kb on - strand, within H281DRAFT_00822at 911.407 kb on - strand, within H281DRAFT_00822at 911.647 kb on + strand, within H281DRAFT_00822at 911.647 kb on + strand, within H281DRAFT_00822at 911.647 kb on + strand, within H281DRAFT_00822at 911.648 kb on - strand, within H281DRAFT_00822at 911.648 kb on - strand, within H281DRAFT_00822at 911.648 kb on - strand, within H281DRAFT_00822at 911.648 kb on - strand, within H281DRAFT_00822

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
remove
909,827 + H281DRAFT_00820 0.13 +1.8
909,838 - H281DRAFT_00820 0.15 +0.2
909,840 + H281DRAFT_00820 0.15 -0.4
910,114 - H281DRAFT_00820 0.69 +1.3
910,116 + H281DRAFT_00820 0.70 +2.4
910,117 - H281DRAFT_00820 0.70 +1.0
910,366 + H281DRAFT_00821 0.33 +0.4
910,367 - H281DRAFT_00821 0.34 -1.0
910,370 + H281DRAFT_00821 0.34 -0.3
910,370 + H281DRAFT_00821 0.34 +0.6
910,370 + H281DRAFT_00821 0.34 -0.8
910,371 - H281DRAFT_00821 0.34 -2.2
910,465 + H281DRAFT_00821 0.56 +0.5
910,535 + H281DRAFT_00821 0.72 +1.5
910,535 + H281DRAFT_00821 0.72 +1.6
910,535 + H281DRAFT_00821 0.72 -0.9
910,535 + H281DRAFT_00821 0.72 +0.2
910,536 - H281DRAFT_00821 0.72 +0.4
911,001 + H281DRAFT_00822 0.16 -0.6
911,002 - H281DRAFT_00822 0.16 -0.8
911,031 + H281DRAFT_00822 0.18 -1.2
911,032 - H281DRAFT_00822 0.18 +0.2
911,032 - H281DRAFT_00822 0.18 +0.3
911,157 + H281DRAFT_00822 0.27 +0.4
911,317 + H281DRAFT_00822 0.39 +0.6
911,319 + H281DRAFT_00822 0.39 -0.9
911,319 + H281DRAFT_00822 0.39 -0.2
911,319 + H281DRAFT_00822 0.39 +0.1
911,319 + H281DRAFT_00822 0.39 +0.1
911,320 - H281DRAFT_00822 0.39 -0.6
911,320 - H281DRAFT_00822 0.39 +0.3
911,407 - H281DRAFT_00822 0.45 -0.6
911,407 - H281DRAFT_00822 0.45 +0.2
911,647 + H281DRAFT_00822 0.63 -0.3
911,647 + H281DRAFT_00822 0.63 +0.8
911,647 + H281DRAFT_00822 0.63 +0.3
911,648 - H281DRAFT_00822 0.63 +0.2
911,648 - H281DRAFT_00822 0.63 -0.4
911,648 - H281DRAFT_00822 0.63 -0.2
911,648 - H281DRAFT_00822 0.63 -1.4

Or see this region's nucleotide sequence