Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00608 and H281DRAFT_00609 are separated by 30 nucleotides H281DRAFT_00609 and H281DRAFT_00610 are separated by 469 nucleotides
H281DRAFT_00608: H281DRAFT_00608 - UTP--GlnB (protein PII) uridylyltransferase, GlnD, at 681,701 to 684,280
_00608
H281DRAFT_00609: H281DRAFT_00609 - methionine aminopeptidase, type I, at 684,311 to 685,120
_00609
H281DRAFT_00610: H281DRAFT_00610 - SSU ribosomal protein S2P, at 685,590 to 686,342
_00610
Position (kb) 684
685
686 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 683.317 kb on + strand, within H281DRAFT_00608 at 684.274 kb on + strand at 684.274 kb on + strand at 684.275 kb on - strand at 684.368 kb on + strand at 684.368 kb on + strand at 684.368 kb on + strand at 684.369 kb on - strand at 684.369 kb on - strand at 684.607 kb on - strand, within H281DRAFT_00609 at 684.624 kb on + strand, within H281DRAFT_00609 at 684.624 kb on + strand, within H281DRAFT_00609 at 684.785 kb on - strand, within H281DRAFT_00609 at 684.785 kb on - strand, within H281DRAFT_00609 at 684.785 kb on - strand, within H281DRAFT_00609 at 684.796 kb on - strand, within H281DRAFT_00609 at 684.796 kb on - strand, within H281DRAFT_00609 at 684.937 kb on - strand, within H281DRAFT_00609 at 684.979 kb on - strand at 684.979 kb on - strand, within H281DRAFT_00609 at 684.979 kb on - strand, within H281DRAFT_00609 at 685.042 kb on - strand at 685.042 kb on - strand at 685.042 kb on - strand at 685.114 kb on + strand at 685.233 kb on + strand at 685.233 kb on + strand at 685.234 kb on - strand at 685.337 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 683,317 + H281DRAFT_00608 0.63 -2.6 684,274 + -0.1 684,274 + -2.4 684,275 - -0.3 684,368 + -2.2 684,368 + -0.8 684,368 + -3.2 684,369 - -1.8 684,369 - -1.0 684,607 - H281DRAFT_00609 0.37 +0.7 684,624 + H281DRAFT_00609 0.39 -3.6 684,624 + H281DRAFT_00609 0.39 -2.4 684,785 - H281DRAFT_00609 0.59 +0.5 684,785 - H281DRAFT_00609 0.59 +2.0 684,785 - H281DRAFT_00609 0.59 -2.0 684,796 - H281DRAFT_00609 0.60 +0.0 684,796 - H281DRAFT_00609 0.60 -0.1 684,937 - H281DRAFT_00609 0.77 -0.3 684,979 - +1.7 684,979 - H281DRAFT_00609 0.82 +0.2 684,979 - H281DRAFT_00609 0.82 +0.1 685,042 - +0.0 685,042 - -1.9 685,042 - -0.4 685,114 + -0.2 685,233 + +0.5 685,233 + +1.8 685,234 - -0.3 685,337 + -0.9
Or see this region's nucleotide sequence