Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00510 and H281DRAFT_00511 are separated by 6 nucleotides H281DRAFT_00511 and H281DRAFT_00512 are separated by 117 nucleotides H281DRAFT_00512 and H281DRAFT_00513 are separated by 321 nucleotides H281DRAFT_00513 and H281DRAFT_00514 are separated by 160 nucleotides
H281DRAFT_00510: H281DRAFT_00510 - Beta-barrel assembly machine subunit BamC, at 570,718 to 571,857
_00510
H281DRAFT_00511: H281DRAFT_00511 - Phosphoribosyl 1,2-cyclic phosphodiesterase, at 571,864 to 572,637
_00511
H281DRAFT_00512: H281DRAFT_00512 - hypothetical protein, at 572,755 to 573,453
_00512
H281DRAFT_00513: H281DRAFT_00513 - nucleoside diphosphate kinase, at 573,775 to 574,200
_00513
H281DRAFT_00514: H281DRAFT_00514 - 23S rRNA m(2)A-2503 methyltransferase, at 574,361 to 575,512
_00514
Position (kb) 572
573
574 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 572.008 kb on - strand, within H281DRAFT_00511 at 572.104 kb on + strand, within H281DRAFT_00511 at 572.104 kb on + strand, within H281DRAFT_00511 at 572.104 kb on + strand, within H281DRAFT_00511 at 572.104 kb on + strand, within H281DRAFT_00511 at 572.104 kb on + strand, within H281DRAFT_00511 at 572.105 kb on - strand, within H281DRAFT_00511 at 572.105 kb on - strand, within H281DRAFT_00511 at 572.251 kb on + strand, within H281DRAFT_00511 at 572.251 kb on + strand, within H281DRAFT_00511 at 572.251 kb on + strand, within H281DRAFT_00511 at 572.252 kb on - strand, within H281DRAFT_00511 at 572.297 kb on + strand, within H281DRAFT_00511 at 572.298 kb on - strand, within H281DRAFT_00511 at 572.298 kb on - strand, within H281DRAFT_00511 at 572.516 kb on + strand, within H281DRAFT_00511 at 572.516 kb on + strand, within H281DRAFT_00511 at 572.517 kb on - strand, within H281DRAFT_00511 at 572.517 kb on - strand, within H281DRAFT_00511 at 572.517 kb on - strand, within H281DRAFT_00511 at 572.517 kb on - strand, within H281DRAFT_00511 at 572.647 kb on + strand at 572.749 kb on + strand at 572.756 kb on + strand at 572.757 kb on - strand at 572.814 kb on - strand at 572.825 kb on + strand, within H281DRAFT_00512 at 572.826 kb on - strand, within H281DRAFT_00512 at 572.849 kb on + strand, within H281DRAFT_00512 at 572.850 kb on - strand, within H281DRAFT_00512 at 573.322 kb on + strand, within H281DRAFT_00512 at 573.372 kb on - strand, within H281DRAFT_00512 at 573.372 kb on - strand, within H281DRAFT_00512 at 573.383 kb on - strand, within H281DRAFT_00512 at 573.436 kb on - strand at 573.436 kb on - strand at 573.491 kb on - strand at 573.491 kb on - strand at 573.501 kb on + strand at 573.556 kb on + strand at 573.611 kb on + strand at 573.612 kb on - strand at 573.641 kb on + strand at 573.641 kb on + strand at 573.688 kb on + strand at 574.264 kb on + strand at 574.264 kb on + strand at 574.264 kb on + strand at 574.267 kb on + strand at 574.267 kb on + strand at 574.272 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 572,008 - H281DRAFT_00511 0.19 -0.6 572,104 + H281DRAFT_00511 0.31 -0.6 572,104 + H281DRAFT_00511 0.31 +0.2 572,104 + H281DRAFT_00511 0.31 +0.4 572,104 + H281DRAFT_00511 0.31 +0.8 572,104 + H281DRAFT_00511 0.31 -0.1 572,105 - H281DRAFT_00511 0.31 +1.7 572,105 - H281DRAFT_00511 0.31 +0.1 572,251 + H281DRAFT_00511 0.50 +1.6 572,251 + H281DRAFT_00511 0.50 -1.0 572,251 + H281DRAFT_00511 0.50 -0.3 572,252 - H281DRAFT_00511 0.50 +0.7 572,297 + H281DRAFT_00511 0.56 +0.3 572,298 - H281DRAFT_00511 0.56 -1.6 572,298 - H281DRAFT_00511 0.56 -0.4 572,516 + H281DRAFT_00511 0.84 +0.8 572,516 + H281DRAFT_00511 0.84 -0.8 572,517 - H281DRAFT_00511 0.84 -0.4 572,517 - H281DRAFT_00511 0.84 +0.3 572,517 - H281DRAFT_00511 0.84 +0.3 572,517 - H281DRAFT_00511 0.84 -0.6 572,647 + -0.4 572,749 + -1.4 572,756 + -0.1 572,757 - -0.5 572,814 - +1.0 572,825 + H281DRAFT_00512 0.10 -1.6 572,826 - H281DRAFT_00512 0.10 -0.8 572,849 + H281DRAFT_00512 0.13 -2.9 572,850 - H281DRAFT_00512 0.14 -1.3 573,322 + H281DRAFT_00512 0.81 -0.6 573,372 - H281DRAFT_00512 0.88 -0.8 573,372 - H281DRAFT_00512 0.88 -3.0 573,383 - H281DRAFT_00512 0.90 -1.1 573,436 - -1.7 573,436 - -0.6 573,491 - +0.1 573,491 - +0.3 573,501 + -0.9 573,556 + +0.7 573,611 + +0.0 573,612 - -0.4 573,641 + -2.4 573,641 + -0.3 573,688 + -1.5 574,264 + +0.6 574,264 + +0.9 574,264 + +0.1 574,267 + +0.7 574,267 + -0.6 574,272 + -0.4
Or see this region's nucleotide sequence