Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00037 and H281DRAFT_00038 are separated by 273 nucleotides H281DRAFT_00038 and H281DRAFT_00039 are separated by 130 nucleotides
H281DRAFT_00037: H281DRAFT_00037 - NAD(P)H dehydrogenase (quinone), at 41,671 to 42,525
_00037
H281DRAFT_00038: H281DRAFT_00038 - transcriptional regulator, HxlR family, at 42,799 to 43,140
_00038
H281DRAFT_00039: H281DRAFT_00039 - Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases, at 43,271 to 43,609
_00039
Position (kb) 42
43
44 Strain fitness (log2 ratio) -2
-1
0
1
2 at 41.830 kb on + strand, within H281DRAFT_00037 at 41.836 kb on + strand, within H281DRAFT_00037 at 41.836 kb on + strand, within H281DRAFT_00037 at 41.836 kb on + strand, within H281DRAFT_00037 at 41.836 kb on + strand, within H281DRAFT_00037 at 41.836 kb on + strand, within H281DRAFT_00037 at 41.836 kb on + strand, within H281DRAFT_00037 at 41.836 kb on + strand, within H281DRAFT_00037 at 41.870 kb on + strand, within H281DRAFT_00037 at 41.870 kb on + strand, within H281DRAFT_00037 at 41.870 kb on + strand, within H281DRAFT_00037 at 41.871 kb on - strand, within H281DRAFT_00037 at 41.871 kb on - strand, within H281DRAFT_00037 at 41.874 kb on + strand, within H281DRAFT_00037 at 41.874 kb on + strand, within H281DRAFT_00037 at 41.951 kb on + strand, within H281DRAFT_00037 at 41.951 kb on + strand, within H281DRAFT_00037 at 41.951 kb on + strand, within H281DRAFT_00037 at 41.951 kb on + strand, within H281DRAFT_00037 at 41.952 kb on - strand, within H281DRAFT_00037 at 41.952 kb on - strand, within H281DRAFT_00037 at 41.952 kb on - strand, within H281DRAFT_00037 at 41.952 kb on - strand, within H281DRAFT_00037 at 42.122 kb on - strand, within H281DRAFT_00037 at 42.156 kb on - strand, within H281DRAFT_00037 at 42.187 kb on + strand, within H281DRAFT_00037 at 42.188 kb on - strand, within H281DRAFT_00037 at 42.222 kb on + strand, within H281DRAFT_00037 at 42.222 kb on + strand, within H281DRAFT_00037 at 42.222 kb on + strand, within H281DRAFT_00037 at 42.223 kb on - strand, within H281DRAFT_00037 at 42.223 kb on - strand, within H281DRAFT_00037 at 42.319 kb on + strand, within H281DRAFT_00037 at 42.368 kb on + strand, within H281DRAFT_00037 at 42.369 kb on - strand, within H281DRAFT_00037 at 42.545 kb on + strand at 42.625 kb on - strand at 42.691 kb on + strand at 42.691 kb on + strand at 42.691 kb on + strand at 42.695 kb on - strand at 42.716 kb on - strand at 42.728 kb on - strand at 42.892 kb on + strand, within H281DRAFT_00038 at 42.970 kb on - strand, within H281DRAFT_00038 at 42.970 kb on - strand, within H281DRAFT_00038 at 43.045 kb on + strand, within H281DRAFT_00038 at 43.058 kb on + strand, within H281DRAFT_00038 at 43.151 kb on + strand at 43.151 kb on + strand at 43.151 kb on + strand at 43.151 kb on + strand at 43.153 kb on + strand at 43.153 kb on + strand at 43.199 kb on + strand at 43.263 kb on + strand at 43.272 kb on + strand at 43.272 kb on + strand at 43.272 kb on + strand at 43.273 kb on - strand at 43.273 kb on - strand at 43.276 kb on + strand at 43.498 kb on - strand, within H281DRAFT_00039 at 43.498 kb on - strand, within H281DRAFT_00039 at 43.609 kb on + strand at 43.634 kb on - strand at 43.828 kb on - strand at 43.828 kb on - strand at 43.834 kb on - strand at 43.996 kb on + strand at 43.997 kb on - strand at 43.998 kb on + strand at 43.998 kb on + strand at 43.998 kb on + strand at 43.999 kb on - strand at 44.002 kb on + strand at 44.003 kb on - strand at 44.003 kb on - strand at 44.003 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 41,830 + H281DRAFT_00037 0.19 -0.0 41,836 + H281DRAFT_00037 0.19 +0.4 41,836 + H281DRAFT_00037 0.19 +0.0 41,836 + H281DRAFT_00037 0.19 +0.1 41,836 + H281DRAFT_00037 0.19 -0.6 41,836 + H281DRAFT_00037 0.19 -0.1 41,836 + H281DRAFT_00037 0.19 -0.4 41,836 + H281DRAFT_00037 0.19 +0.3 41,870 + H281DRAFT_00037 0.23 -0.9 41,870 + H281DRAFT_00037 0.23 -0.0 41,870 + H281DRAFT_00037 0.23 -0.3 41,871 - H281DRAFT_00037 0.23 -0.1 41,871 - H281DRAFT_00037 0.23 +0.4 41,874 + H281DRAFT_00037 0.24 +2.6 41,874 + H281DRAFT_00037 0.24 +0.9 41,951 + H281DRAFT_00037 0.33 -0.3 41,951 + H281DRAFT_00037 0.33 +0.7 41,951 + H281DRAFT_00037 0.33 -1.8 41,951 + H281DRAFT_00037 0.33 -0.5 41,952 - H281DRAFT_00037 0.33 +0.3 41,952 - H281DRAFT_00037 0.33 -0.2 41,952 - H281DRAFT_00037 0.33 -0.4 41,952 - H281DRAFT_00037 0.33 +0.4 42,122 - H281DRAFT_00037 0.53 -0.4 42,156 - H281DRAFT_00037 0.57 -0.2 42,187 + H281DRAFT_00037 0.60 +0.1 42,188 - H281DRAFT_00037 0.60 +0.7 42,222 + H281DRAFT_00037 0.64 +0.1 42,222 + H281DRAFT_00037 0.64 +0.0 42,222 + H281DRAFT_00037 0.64 -0.9 42,223 - H281DRAFT_00037 0.65 -0.0 42,223 - H281DRAFT_00037 0.65 -0.4 42,319 + H281DRAFT_00037 0.76 -0.6 42,368 + H281DRAFT_00037 0.82 +0.0 42,369 - H281DRAFT_00037 0.82 +1.2 42,545 + +0.4 42,625 - -0.4 42,691 + -0.5 42,691 + +0.5 42,691 + +0.0 42,695 - -0.4 42,716 - +0.9 42,728 - -0.2 42,892 + H281DRAFT_00038 0.27 -1.1 42,970 - H281DRAFT_00038 0.50 -0.5 42,970 - H281DRAFT_00038 0.50 +1.6 43,045 + H281DRAFT_00038 0.72 -0.0 43,058 + H281DRAFT_00038 0.76 -0.6 43,151 + +0.9 43,151 + -0.1 43,151 + +0.6 43,151 + -0.5 43,153 + -1.0 43,153 + -0.6 43,199 + -0.9 43,263 + +2.3 43,272 + -0.2 43,272 + +1.2 43,272 + -0.3 43,273 - +0.4 43,273 - +0.4 43,276 + +0.6 43,498 - H281DRAFT_00039 0.67 +1.3 43,498 - H281DRAFT_00039 0.67 +2.5 43,609 + +0.8 43,634 - +0.9 43,828 - -0.4 43,828 - +1.0 43,834 - -1.3 43,996 + +1.0 43,997 - -0.2 43,998 + +0.1 43,998 + -1.0 43,998 + +0.3 43,999 - +0.5 44,002 + +0.5 44,003 - -0.5 44,003 - -2.1 44,003 - +0.1
Or see this region's nucleotide sequence