Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04153

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04152 and H281DRAFT_04153 are separated by 115 nucleotidesH281DRAFT_04153 and H281DRAFT_04154 are separated by 89 nucleotides H281DRAFT_04152: H281DRAFT_04152 - D-arabinitol 4-dehydrogenase, at 263,397 to 264,809 _04152 H281DRAFT_04153: H281DRAFT_04153 - xylulokinase, at 264,925 to 266,406 _04153 H281DRAFT_04154: H281DRAFT_04154 - DNA-binding transcriptional regulator LsrR, DeoR family, at 266,496 to 267,443 _04154 Position (kb) 264 265 266 267Strain fitness (log2 ratio) -1 0 1at 264.261 kb on - strand, within H281DRAFT_04152at 264.261 kb on - strand, within H281DRAFT_04152at 264.300 kb on + strand, within H281DRAFT_04152at 264.301 kb on - strand, within H281DRAFT_04152at 264.352 kb on - strand, within H281DRAFT_04152at 264.444 kb on + strand, within H281DRAFT_04152at 264.445 kb on - strand, within H281DRAFT_04152at 264.445 kb on - strand, within H281DRAFT_04152at 264.445 kb on - strand, within H281DRAFT_04152at 264.445 kb on - strand, within H281DRAFT_04152at 264.445 kb on - strand, within H281DRAFT_04152at 264.446 kb on + strand, within H281DRAFT_04152at 264.446 kb on + strand, within H281DRAFT_04152at 264.624 kb on + strand, within H281DRAFT_04152at 264.625 kb on - strand, within H281DRAFT_04152at 264.625 kb on - strand, within H281DRAFT_04152at 264.810 kb on + strandat 264.811 kb on - strandat 264.855 kb on + strandat 264.929 kb on - strandat 265.706 kb on + strand, within H281DRAFT_04153at 265.880 kb on + strand, within H281DRAFT_04153at 265.931 kb on - strand, within H281DRAFT_04153at 266.356 kb on + strandat 266.412 kb on + strandat 266.529 kb on - strandat 266.550 kb on + strandat 266.551 kb on - strandat 266.965 kb on - strand, within H281DRAFT_04154

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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264,261 - H281DRAFT_04152 0.61 -0.4
264,261 - H281DRAFT_04152 0.61 -0.3
264,300 + H281DRAFT_04152 0.64 -0.2
264,301 - H281DRAFT_04152 0.64 -0.3
264,352 - H281DRAFT_04152 0.68 +0.2
264,444 + H281DRAFT_04152 0.74 +0.0
264,445 - H281DRAFT_04152 0.74 +0.4
264,445 - H281DRAFT_04152 0.74 -0.3
264,445 - H281DRAFT_04152 0.74 +0.2
264,445 - H281DRAFT_04152 0.74 -0.6
264,445 - H281DRAFT_04152 0.74 -0.0
264,446 + H281DRAFT_04152 0.74 -0.7
264,446 + H281DRAFT_04152 0.74 -0.2
264,624 + H281DRAFT_04152 0.87 -0.3
264,625 - H281DRAFT_04152 0.87 +0.1
264,625 - H281DRAFT_04152 0.87 +0.3
264,810 + +0.2
264,811 - -0.7
264,855 + -0.5
264,929 - +0.9
265,706 + H281DRAFT_04153 0.53 +0.7
265,880 + H281DRAFT_04153 0.64 -0.7
265,931 - H281DRAFT_04153 0.68 -1.5
266,356 + +0.1
266,412 + +0.1
266,529 - +0.5
266,550 + -0.6
266,551 - +0.5
266,965 - H281DRAFT_04154 0.49 +0.5

Or see this region's nucleotide sequence