Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02702

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_02701 and H281DRAFT_02702 are separated by 11 nucleotidesH281DRAFT_02702 and H281DRAFT_02703 are separated by 48 nucleotides H281DRAFT_02701: H281DRAFT_02701 - dihydroxyacetone kinase, C-terminal domain, at 284,262 to 284,888 _02701 H281DRAFT_02702: H281DRAFT_02702 - dihydroxyacetone kinase DhaK subunit, at 284,900 to 285,910 _02702 H281DRAFT_02703: H281DRAFT_02703 - monosaccharide ABC transporter membrane protein, CUT2 family, at 285,959 to 286,960 _02703 Position (kb) 284 285 286Strain fitness (log2 ratio) -1 0 1at 284.086 kb on + strandat 284.191 kb on + strandat 284.191 kb on + strandat 284.293 kb on - strandat 284.390 kb on + strand, within H281DRAFT_02701at 284.880 kb on + strandat 284.987 kb on - strandat 284.987 kb on - strandat 285.067 kb on + strand, within H281DRAFT_02702at 285.257 kb on - strand, within H281DRAFT_02702at 285.603 kb on + strand, within H281DRAFT_02702at 285.604 kb on - strand, within H281DRAFT_02702at 286.382 kb on + strand, within H281DRAFT_02703at 286.382 kb on + strand, within H281DRAFT_02703at 286.406 kb on + strand, within H281DRAFT_02703at 286.735 kb on + strand, within H281DRAFT_02703at 286.736 kb on - strand, within H281DRAFT_02703at 286.807 kb on + strand, within H281DRAFT_02703

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
284,086 + -0.7
284,191 + -0.1
284,191 + +0.0
284,293 - +0.9
284,390 + H281DRAFT_02701 0.20 -0.4
284,880 + -0.2
284,987 - -0.5
284,987 - -0.4
285,067 + H281DRAFT_02702 0.17 +0.0
285,257 - H281DRAFT_02702 0.35 -0.2
285,603 + H281DRAFT_02702 0.70 -0.7
285,604 - H281DRAFT_02702 0.70 -0.9
286,382 + H281DRAFT_02703 0.42 +0.5
286,382 + H281DRAFT_02703 0.42 -0.3
286,406 + H281DRAFT_02703 0.45 -0.6
286,735 + H281DRAFT_02703 0.77 -0.2
286,736 - H281DRAFT_02703 0.78 +0.4
286,807 + H281DRAFT_02703 0.85 +0.2

Or see this region's nucleotide sequence