Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00317

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00316 and H281DRAFT_00317 overlap by 1 nucleotidesH281DRAFT_00317 and H281DRAFT_00318 overlap by 1 nucleotides H281DRAFT_00316: H281DRAFT_00316 - ADP-heptose:LPS heptosyltransferase, at 343,956 to 345,275 _00316 H281DRAFT_00317: H281DRAFT_00317 - O-antigen ligase, at 345,275 to 346,630 _00317 H281DRAFT_00318: H281DRAFT_00318 - Glycosyltransferase involved in cell wall bisynthesis, at 346,630 to 347,865 _00318 Position (kb) 345 346 347Strain fitness (log2 ratio) -2 -1 0 1at 344.368 kb on + strand, within H281DRAFT_00316at 344.368 kb on + strand, within H281DRAFT_00316at 344.369 kb on - strand, within H281DRAFT_00316at 344.371 kb on - strand, within H281DRAFT_00316at 344.458 kb on - strand, within H281DRAFT_00316at 344.493 kb on - strand, within H281DRAFT_00316at 344.589 kb on + strand, within H281DRAFT_00316at 344.590 kb on - strand, within H281DRAFT_00316at 344.635 kb on + strand, within H281DRAFT_00316at 344.635 kb on + strandat 344.636 kb on - strand, within H281DRAFT_00316at 344.727 kb on + strand, within H281DRAFT_00316at 344.727 kb on + strand, within H281DRAFT_00316at 344.727 kb on + strandat 344.727 kb on + strand, within H281DRAFT_00316at 344.728 kb on - strand, within H281DRAFT_00316at 344.821 kb on - strand, within H281DRAFT_00316at 345.008 kb on + strand, within H281DRAFT_00316at 345.009 kb on - strand, within H281DRAFT_00316at 345.009 kb on - strand, within H281DRAFT_00316at 345.126 kb on - strand, within H281DRAFT_00316at 345.142 kb on + strand, within H281DRAFT_00316at 345.142 kb on + strand, within H281DRAFT_00316at 345.143 kb on - strand, within H281DRAFT_00316at 345.257 kb on + strandat 345.258 kb on - strandat 345.274 kb on - strandat 345.555 kb on - strand, within H281DRAFT_00317at 345.722 kb on + strand, within H281DRAFT_00317at 345.740 kb on - strand, within H281DRAFT_00317at 345.907 kb on - strand, within H281DRAFT_00317at 346.142 kb on + strand, within H281DRAFT_00317at 346.142 kb on + strand, within H281DRAFT_00317at 346.211 kb on + strand, within H281DRAFT_00317at 346.643 kb on + strandat 346.643 kb on + strandat 346.884 kb on + strand, within H281DRAFT_00318at 346.884 kb on + strand, within H281DRAFT_00318at 347.120 kb on - strand, within H281DRAFT_00318at 347.152 kb on + strand, within H281DRAFT_00318at 347.153 kb on - strand, within H281DRAFT_00318at 347.521 kb on + strand, within H281DRAFT_00318at 347.524 kb on - strand, within H281DRAFT_00318

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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344,368 + H281DRAFT_00316 0.31 -0.5
344,368 + H281DRAFT_00316 0.31 +0.1
344,369 - H281DRAFT_00316 0.31 -1.0
344,371 - H281DRAFT_00316 0.31 -0.2
344,458 - H281DRAFT_00316 0.38 -1.0
344,493 - H281DRAFT_00316 0.41 +0.2
344,589 + H281DRAFT_00316 0.48 -0.9
344,590 - H281DRAFT_00316 0.48 -1.9
344,635 + H281DRAFT_00316 0.51 -0.1
344,635 + +0.9
344,636 - H281DRAFT_00316 0.52 -0.3
344,727 + H281DRAFT_00316 0.58 -0.3
344,727 + H281DRAFT_00316 0.58 -1.4
344,727 + -1.1
344,727 + H281DRAFT_00316 0.58 -0.4
344,728 - H281DRAFT_00316 0.58 -0.7
344,821 - H281DRAFT_00316 0.66 -1.4
345,008 + H281DRAFT_00316 0.80 -0.2
345,009 - H281DRAFT_00316 0.80 -0.2
345,009 - H281DRAFT_00316 0.80 -0.9
345,126 - H281DRAFT_00316 0.89 -0.4
345,142 + H281DRAFT_00316 0.90 +0.5
345,142 + H281DRAFT_00316 0.90 -0.1
345,143 - H281DRAFT_00316 0.90 +0.5
345,257 + +0.9
345,258 - -0.6
345,274 - -0.3
345,555 - H281DRAFT_00317 0.21 -0.2
345,722 + H281DRAFT_00317 0.33 -1.3
345,740 - H281DRAFT_00317 0.34 -0.6
345,907 - H281DRAFT_00317 0.47 -2.2
346,142 + H281DRAFT_00317 0.64 -0.1
346,142 + H281DRAFT_00317 0.64 -0.6
346,211 + H281DRAFT_00317 0.69 -1.9
346,643 + +0.5
346,643 + -0.3
346,884 + H281DRAFT_00318 0.21 -0.5
346,884 + H281DRAFT_00318 0.21 +0.1
347,120 - H281DRAFT_00318 0.40 -0.2
347,152 + H281DRAFT_00318 0.42 +0.3
347,153 - H281DRAFT_00318 0.42 -0.4
347,521 + H281DRAFT_00318 0.72 -0.1
347,524 - H281DRAFT_00318 0.72 -0.0

Or see this region's nucleotide sequence