Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00235

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00233 and H281DRAFT_00234 are separated by 105 nucleotidesH281DRAFT_00234 and H281DRAFT_00235 overlap by 4 nucleotidesH281DRAFT_00235 and H281DRAFT_00236 are separated by 238 nucleotides H281DRAFT_00233: H281DRAFT_00233 - NitT/TauT family transport system ATP-binding protein, at 253,364 to 254,710 _00233 H281DRAFT_00234: H281DRAFT_00234 - hypothetical protein, at 254,816 to 255,358 _00234 H281DRAFT_00235: H281DRAFT_00235 - hypothetical protein, at 255,355 to 255,969 _00235 H281DRAFT_00236: H281DRAFT_00236 - sigma54 specific transcriptional regulator, Fis family, at 256,208 to 257,266 _00236 Position (kb) 255 256Strain fitness (log2 ratio) -1 0 1at 254.902 kb on - strand, within H281DRAFT_00234at 255.124 kb on + strand, within H281DRAFT_00234at 255.126 kb on + strand, within H281DRAFT_00234at 255.287 kb on + strand, within H281DRAFT_00234at 255.288 kb on - strand, within H281DRAFT_00234at 255.430 kb on - strand, within H281DRAFT_00235at 255.677 kb on + strand, within H281DRAFT_00235at 255.741 kb on + strand, within H281DRAFT_00235at 255.990 kb on - strandat 255.990 kb on - strandat 256.080 kb on + strandat 256.220 kb on - strandat 256.264 kb on - strandat 256.677 kb on + strand, within H281DRAFT_00236at 256.677 kb on + strand, within H281DRAFT_00236at 256.678 kb on - strand, within H281DRAFT_00236

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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254,902 - H281DRAFT_00234 0.16 +0.0
255,124 + H281DRAFT_00234 0.57 -0.7
255,126 + H281DRAFT_00234 0.57 +0.0
255,287 + H281DRAFT_00234 0.87 +0.5
255,288 - H281DRAFT_00234 0.87 +0.3
255,430 - H281DRAFT_00235 0.12 -1.4
255,677 + H281DRAFT_00235 0.52 -0.7
255,741 + H281DRAFT_00235 0.63 -1.5
255,990 - +0.1
255,990 - -0.3
256,080 + +0.4
256,220 - +1.0
256,264 - +0.0
256,677 + H281DRAFT_00236 0.44 +1.0
256,677 + H281DRAFT_00236 0.44 +0.1
256,678 - H281DRAFT_00236 0.44 -0.2

Or see this region's nucleotide sequence