Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06264

Experiment: D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_06263 and H281DRAFT_06264 are separated by 68 nucleotidesH281DRAFT_06264 and H281DRAFT_06265 are separated by 87 nucleotidesH281DRAFT_06265 and H281DRAFT_06266 are separated by 85 nucleotides H281DRAFT_06263: H281DRAFT_06263 - GTP-binding protein, at 43,648 to 44,769 _06263 H281DRAFT_06264: H281DRAFT_06264 - glutamate 5-kinase, at 44,838 to 45,956 _06264 H281DRAFT_06265: H281DRAFT_06265 - CNP1-like family protein, at 46,044 to 46,601 _06265 H281DRAFT_06266: H281DRAFT_06266 - putative (di)nucleoside polyphosphate hydrolase, at 46,687 to 47,430 _06266 Position (kb) 44 45 46Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 44.702 kb on + strandat 44.703 kb on - strandat 44.990 kb on - strand, within H281DRAFT_06264at 44.990 kb on - strand, within H281DRAFT_06264at 45.109 kb on - strand, within H281DRAFT_06264at 45.109 kb on - strand, within H281DRAFT_06264at 45.189 kb on + strand, within H281DRAFT_06264at 45.374 kb on + strand, within H281DRAFT_06264at 45.906 kb on + strandat 45.907 kb on - strandat 45.908 kb on + strandat 45.908 kb on + strandat 45.908 kb on + strandat 45.908 kb on + strandat 45.908 kb on + strandat 45.908 kb on + strandat 45.908 kb on + strandat 45.909 kb on - strandat 45.909 kb on - strandat 45.909 kb on - strandat 45.909 kb on - strandat 45.909 kb on - strandat 45.958 kb on + strandat 45.958 kb on + strandat 45.962 kb on + strandat 45.984 kb on + strandat 45.984 kb on + strandat 45.985 kb on - strandat 46.076 kb on - strandat 46.135 kb on + strand, within H281DRAFT_06265at 46.135 kb on + strand, within H281DRAFT_06265at 46.135 kb on + strand, within H281DRAFT_06265at 46.135 kb on + strand, within H281DRAFT_06265at 46.145 kb on - strand, within H281DRAFT_06265at 46.145 kb on - strand, within H281DRAFT_06265at 46.160 kb on - strand, within H281DRAFT_06265at 46.160 kb on - strand, within H281DRAFT_06265at 46.246 kb on + strand, within H281DRAFT_06265at 46.247 kb on - strand, within H281DRAFT_06265at 46.261 kb on + strand, within H281DRAFT_06265at 46.261 kb on + strand, within H281DRAFT_06265at 46.261 kb on + strand, within H281DRAFT_06265at 46.261 kb on + strand, within H281DRAFT_06265at 46.261 kb on + strand, within H281DRAFT_06265at 46.261 kb on + strand, within H281DRAFT_06265at 46.262 kb on - strand, within H281DRAFT_06265at 46.262 kb on - strand, within H281DRAFT_06265at 46.262 kb on - strand, within H281DRAFT_06265at 46.262 kb on - strand, within H281DRAFT_06265at 46.285 kb on + strand, within H281DRAFT_06265at 46.285 kb on + strand, within H281DRAFT_06265at 46.286 kb on - strand, within H281DRAFT_06265at 46.286 kb on - strand, within H281DRAFT_06265at 46.329 kb on - strand, within H281DRAFT_06265at 46.386 kb on + strand, within H281DRAFT_06265at 46.387 kb on - strand, within H281DRAFT_06265at 46.387 kb on - strand, within H281DRAFT_06265at 46.495 kb on + strand, within H281DRAFT_06265at 46.496 kb on - strand, within H281DRAFT_06265at 46.602 kb on + strandat 46.659 kb on + strandat 46.660 kb on - strandat 46.660 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
remove
44,702 + -0.0
44,703 - -2.5
44,990 - H281DRAFT_06264 0.14 -2.8
44,990 - H281DRAFT_06264 0.14 -2.1
45,109 - H281DRAFT_06264 0.24 -3.4
45,109 - H281DRAFT_06264 0.24 -3.1
45,189 + H281DRAFT_06264 0.31 -3.2
45,374 + H281DRAFT_06264 0.48 -3.5
45,906 + -2.7
45,907 - -4.2
45,908 + -2.8
45,908 + -3.3
45,908 + -3.6
45,908 + -3.8
45,908 + -2.5
45,908 + -0.8
45,908 + -3.3
45,909 - -2.6
45,909 - -4.7
45,909 - -2.5
45,909 - -3.6
45,909 - -3.4
45,958 + -0.1
45,958 + +0.5
45,962 + +0.3
45,984 + +0.6
45,984 + +0.3
45,985 - -0.5
46,076 - -0.2
46,135 + H281DRAFT_06265 0.16 +0.2
46,135 + H281DRAFT_06265 0.16 -0.5
46,135 + H281DRAFT_06265 0.16 +0.1
46,135 + H281DRAFT_06265 0.16 +0.9
46,145 - H281DRAFT_06265 0.18 +0.6
46,145 - H281DRAFT_06265 0.18 -0.0
46,160 - H281DRAFT_06265 0.21 +1.5
46,160 - H281DRAFT_06265 0.21 +0.1
46,246 + H281DRAFT_06265 0.36 -0.4
46,247 - H281DRAFT_06265 0.36 +0.4
46,261 + H281DRAFT_06265 0.39 +0.3
46,261 + H281DRAFT_06265 0.39 +0.3
46,261 + H281DRAFT_06265 0.39 -0.1
46,261 + H281DRAFT_06265 0.39 -0.2
46,261 + H281DRAFT_06265 0.39 +0.1
46,261 + H281DRAFT_06265 0.39 -0.1
46,262 - H281DRAFT_06265 0.39 +0.6
46,262 - H281DRAFT_06265 0.39 -0.3
46,262 - H281DRAFT_06265 0.39 +0.1
46,262 - H281DRAFT_06265 0.39 -0.1
46,285 + H281DRAFT_06265 0.43 -1.3
46,285 + H281DRAFT_06265 0.43 +0.5
46,286 - H281DRAFT_06265 0.43 +0.2
46,286 - H281DRAFT_06265 0.43 -0.1
46,329 - H281DRAFT_06265 0.51 +0.0
46,386 + H281DRAFT_06265 0.61 +0.6
46,387 - H281DRAFT_06265 0.61 -0.3
46,387 - H281DRAFT_06265 0.61 +0.1
46,495 + H281DRAFT_06265 0.81 +0.8
46,496 - H281DRAFT_06265 0.81 +0.3
46,602 + +0.7
46,659 + -0.0
46,660 - -0.4
46,660 - -0.7

Or see this region's nucleotide sequence