Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04868

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04867 and H281DRAFT_04868 are separated by 66 nucleotidesH281DRAFT_04868 and H281DRAFT_04869 are separated by 15 nucleotides H281DRAFT_04867: H281DRAFT_04867 - N-formylglutamate deformylase, at 9,649 to 10,461 _04867 H281DRAFT_04868: H281DRAFT_04868 - formimidoylglutamate deiminase (EC 3.5.3.13), at 10,528 to 11,925 _04868 H281DRAFT_04869: H281DRAFT_04869 - imidazolonepropionase, at 11,941 to 13,170 _04869 Position (kb) 10 11 12Strain fitness (log2 ratio) -1 0 1at 9.571 kb on - strandat 9.611 kb on + strandat 9.616 kb on + strandat 9.759 kb on - strand, within H281DRAFT_04867at 9.759 kb on - strand, within H281DRAFT_04867at 9.816 kb on - strand, within H281DRAFT_04867at 9.982 kb on + strand, within H281DRAFT_04867at 10.174 kb on + strand, within H281DRAFT_04867at 10.242 kb on - strand, within H281DRAFT_04867at 10.255 kb on - strand, within H281DRAFT_04867at 10.255 kb on - strand, within H281DRAFT_04867at 10.295 kb on + strand, within H281DRAFT_04867at 10.447 kb on - strandat 10.970 kb on + strand, within H281DRAFT_04868at 10.970 kb on + strand, within H281DRAFT_04868at 10.971 kb on - strand, within H281DRAFT_04868at 11.361 kb on + strandat 11.362 kb on - strand, within H281DRAFT_04868at 11.364 kb on + strand, within H281DRAFT_04868at 11.364 kb on + strand, within H281DRAFT_04868at 11.365 kb on - strand, within H281DRAFT_04868at 11.535 kb on - strand, within H281DRAFT_04868at 11.582 kb on + strand, within H281DRAFT_04868at 11.583 kb on - strand, within H281DRAFT_04868at 12.312 kb on - strand, within H281DRAFT_04869at 12.678 kb on - strand, within H281DRAFT_04869

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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9,571 - +0.9
9,611 + -0.1
9,616 + +0.2
9,759 - H281DRAFT_04867 0.14 +0.8
9,759 - H281DRAFT_04867 0.14 +0.2
9,816 - H281DRAFT_04867 0.21 +0.7
9,982 + H281DRAFT_04867 0.41 +0.4
10,174 + H281DRAFT_04867 0.65 -0.3
10,242 - H281DRAFT_04867 0.73 +0.0
10,255 - H281DRAFT_04867 0.75 +0.1
10,255 - H281DRAFT_04867 0.75 -0.3
10,295 + H281DRAFT_04867 0.79 +0.7
10,447 - +0.2
10,970 + H281DRAFT_04868 0.32 +0.3
10,970 + H281DRAFT_04868 0.32 +0.5
10,971 - H281DRAFT_04868 0.32 +1.1
11,361 + -0.1
11,362 - H281DRAFT_04868 0.60 -0.3
11,364 + H281DRAFT_04868 0.60 +0.0
11,364 + H281DRAFT_04868 0.60 +0.4
11,365 - H281DRAFT_04868 0.60 +1.0
11,535 - H281DRAFT_04868 0.72 -0.5
11,582 + H281DRAFT_04868 0.75 -0.2
11,583 - H281DRAFT_04868 0.75 +0.7
12,312 - H281DRAFT_04869 0.30 +0.4
12,678 - H281DRAFT_04869 0.60 +0.4

Or see this region's nucleotide sequence