Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04103 and H281DRAFT_04104 overlap by 45 nucleotides H281DRAFT_04104 and H281DRAFT_04105 are separated by 203 nucleotides H281DRAFT_04105 and H281DRAFT_04106 are separated by 108 nucleotides
H281DRAFT_04103: H281DRAFT_04103 - EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant), at 212,840 to 214,117
_04103
H281DRAFT_04104: H281DRAFT_04104 - RNA polymerase sigma-70 factor, ECF subfamily, at 214,073 to 215,260
_04104
H281DRAFT_04105: H281DRAFT_04105 - ATP-dependent Clp protease proteolytic subunit ClpP, at 215,464 to 216,123
_04105
H281DRAFT_04106: H281DRAFT_04106 - Uncharacterized conserved protein, LabA/DUF88 family, at 216,232 to 217,725
_04106
Position (kb) 214
215
216 Strain fitness (log2 ratio) -1
0
1 at 213.165 kb on + strand, within H281DRAFT_04103 at 213.201 kb on - strand, within H281DRAFT_04103 at 213.256 kb on - strand, within H281DRAFT_04103 at 213.342 kb on + strand, within H281DRAFT_04103 at 213.533 kb on - strand, within H281DRAFT_04103 at 213.720 kb on - strand, within H281DRAFT_04103 at 213.947 kb on + strand, within H281DRAFT_04103 at 213.947 kb on + strand, within H281DRAFT_04103 at 213.987 kb on + strand, within H281DRAFT_04103 at 213.987 kb on + strand, within H281DRAFT_04103 at 213.988 kb on - strand, within H281DRAFT_04103 at 213.988 kb on - strand, within H281DRAFT_04103 at 213.988 kb on - strand, within H281DRAFT_04103 at 214.052 kb on - strand at 214.074 kb on + strand at 214.081 kb on - strand at 214.081 kb on - strand at 214.309 kb on - strand, within H281DRAFT_04104 at 214.532 kb on + strand, within H281DRAFT_04104 at 214.823 kb on - strand, within H281DRAFT_04104 at 214.823 kb on - strand, within H281DRAFT_04104 at 214.875 kb on - strand, within H281DRAFT_04104 at 214.932 kb on + strand, within H281DRAFT_04104 at 214.933 kb on - strand, within H281DRAFT_04104 at 214.933 kb on - strand, within H281DRAFT_04104 at 215.305 kb on + strand at 215.305 kb on + strand at 215.371 kb on - strand at 215.403 kb on - strand at 215.476 kb on + strand at 215.516 kb on + strand at 215.517 kb on - strand at 215.546 kb on - strand at 215.554 kb on + strand, within H281DRAFT_04105 at 215.554 kb on + strand, within H281DRAFT_04105 at 215.554 kb on + strand, within H281DRAFT_04105 at 215.555 kb on - strand, within H281DRAFT_04105 at 215.670 kb on + strand, within H281DRAFT_04105 at 215.671 kb on - strand, within H281DRAFT_04105 at 215.671 kb on - strand, within H281DRAFT_04105 at 215.681 kb on - strand, within H281DRAFT_04105 at 215.681 kb on - strand, within H281DRAFT_04105 at 215.707 kb on + strand, within H281DRAFT_04105 at 215.726 kb on - strand, within H281DRAFT_04105 at 215.765 kb on + strand, within H281DRAFT_04105 at 215.766 kb on - strand, within H281DRAFT_04105 at 215.898 kb on + strand, within H281DRAFT_04105 at 215.898 kb on + strand, within H281DRAFT_04105 at 215.898 kb on + strand, within H281DRAFT_04105 at 215.898 kb on + strand, within H281DRAFT_04105 at 215.899 kb on - strand, within H281DRAFT_04105 at 215.900 kb on + strand, within H281DRAFT_04105 at 215.900 kb on + strand, within H281DRAFT_04105 at 215.901 kb on - strand, within H281DRAFT_04105 at 215.927 kb on - strand, within H281DRAFT_04105 at 216.041 kb on - strand, within H281DRAFT_04105 at 216.059 kb on + strand at 216.121 kb on + strand at 216.121 kb on + strand at 216.121 kb on + strand at 216.121 kb on + strand at 216.122 kb on - strand at 216.122 kb on - strand at 216.182 kb on - strand at 216.230 kb on - strand at 216.230 kb on - strand at 216.230 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 213,165 + H281DRAFT_04103 0.25 +0.3 213,201 - H281DRAFT_04103 0.28 -0.1 213,256 - H281DRAFT_04103 0.33 -0.2 213,342 + H281DRAFT_04103 0.39 -0.6 213,533 - H281DRAFT_04103 0.54 -0.3 213,720 - H281DRAFT_04103 0.69 -0.7 213,947 + H281DRAFT_04103 0.87 +0.4 213,947 + H281DRAFT_04103 0.87 +1.3 213,987 + H281DRAFT_04103 0.90 +0.1 213,987 + H281DRAFT_04103 0.90 -0.9 213,988 - H281DRAFT_04103 0.90 +0.2 213,988 - H281DRAFT_04103 0.90 +0.1 213,988 - H281DRAFT_04103 0.90 +0.1 214,052 - +1.0 214,074 + -0.1 214,081 - +0.2 214,081 - +0.5 214,309 - H281DRAFT_04104 0.20 +0.1 214,532 + H281DRAFT_04104 0.39 -0.0 214,823 - H281DRAFT_04104 0.63 +0.5 214,823 - H281DRAFT_04104 0.63 +1.0 214,875 - H281DRAFT_04104 0.68 +0.6 214,932 + H281DRAFT_04104 0.72 +0.8 214,933 - H281DRAFT_04104 0.72 -0.1 214,933 - H281DRAFT_04104 0.72 -0.2 215,305 + +0.3 215,305 + +0.0 215,371 - -0.4 215,403 - -0.5 215,476 + -0.6 215,516 + -0.6 215,517 - +0.5 215,546 - -0.2 215,554 + H281DRAFT_04105 0.14 +1.4 215,554 + H281DRAFT_04105 0.14 -0.0 215,554 + H281DRAFT_04105 0.14 +0.1 215,555 - H281DRAFT_04105 0.14 -0.3 215,670 + H281DRAFT_04105 0.31 +0.4 215,671 - H281DRAFT_04105 0.31 +0.2 215,671 - H281DRAFT_04105 0.31 -0.2 215,681 - H281DRAFT_04105 0.33 +0.0 215,681 - H281DRAFT_04105 0.33 -0.1 215,707 + H281DRAFT_04105 0.37 +0.1 215,726 - H281DRAFT_04105 0.40 +0.3 215,765 + H281DRAFT_04105 0.46 +0.1 215,766 - H281DRAFT_04105 0.46 +0.5 215,898 + H281DRAFT_04105 0.66 -0.2 215,898 + H281DRAFT_04105 0.66 +0.4 215,898 + H281DRAFT_04105 0.66 +0.1 215,898 + H281DRAFT_04105 0.66 -0.9 215,899 - H281DRAFT_04105 0.66 +0.4 215,900 + H281DRAFT_04105 0.66 +0.5 215,900 + H281DRAFT_04105 0.66 -0.9 215,901 - H281DRAFT_04105 0.66 +0.1 215,927 - H281DRAFT_04105 0.70 -0.1 216,041 - H281DRAFT_04105 0.87 +1.1 216,059 + -0.1 216,121 + +0.1 216,121 + +0.5 216,121 + +0.8 216,121 + +0.1 216,122 - -0.0 216,122 - -0.4 216,182 - +0.3 216,230 - +1.0 216,230 - +0.6 216,230 - -0.0
Or see this region's nucleotide sequence