Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03933

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03931 and H281DRAFT_03933 are separated by 630 nucleotidesH281DRAFT_03933 and H281DRAFT_03934 overlap by 8 nucleotides H281DRAFT_03931: H281DRAFT_03931 - phosphoglycolate phosphatase, at 29,713 to 30,426 _03931 H281DRAFT_03933: H281DRAFT_03933 - outer membrane protein, at 31,057 to 32,592 _03933 H281DRAFT_03934: H281DRAFT_03934 - ATP-binding cassette, subfamily B, RaxB, at 32,585 to 34,687 _03934 Position (kb) 31 32 33Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 30.175 kb on - strand, within H281DRAFT_03931at 30.256 kb on + strand, within H281DRAFT_03931at 30.326 kb on - strand, within H281DRAFT_03931at 30.505 kb on + strandat 30.505 kb on + strandat 30.505 kb on + strandat 30.860 kb on - strandat 30.988 kb on + strandat 31.199 kb on - strandat 31.306 kb on - strand, within H281DRAFT_03933at 31.379 kb on + strand, within H281DRAFT_03933at 31.380 kb on - strand, within H281DRAFT_03933at 31.393 kb on - strand, within H281DRAFT_03933at 31.435 kb on + strand, within H281DRAFT_03933at 31.435 kb on + strand, within H281DRAFT_03933at 31.436 kb on - strand, within H281DRAFT_03933at 31.752 kb on + strand, within H281DRAFT_03933at 31.752 kb on + strand, within H281DRAFT_03933at 31.853 kb on + strand, within H281DRAFT_03933at 31.853 kb on + strand, within H281DRAFT_03933at 32.181 kb on - strand, within H281DRAFT_03933at 32.265 kb on + strand, within H281DRAFT_03933at 32.265 kb on + strand, within H281DRAFT_03933at 32.265 kb on + strand, within H281DRAFT_03933at 32.265 kb on + strand, within H281DRAFT_03933at 32.265 kb on + strand, within H281DRAFT_03933at 32.265 kb on + strand, within H281DRAFT_03933at 32.266 kb on - strand, within H281DRAFT_03933at 32.266 kb on - strand, within H281DRAFT_03933at 32.266 kb on - strand, within H281DRAFT_03933at 32.266 kb on - strand, within H281DRAFT_03933at 32.266 kb on - strand, within H281DRAFT_03933at 32.266 kb on - strand, within H281DRAFT_03933at 32.267 kb on + strand, within H281DRAFT_03933at 32.267 kb on + strand, within H281DRAFT_03933at 32.268 kb on - strand, within H281DRAFT_03933at 32.268 kb on - strand, within H281DRAFT_03933at 32.268 kb on - strand, within H281DRAFT_03933at 32.268 kb on - strand, within H281DRAFT_03933at 32.333 kb on + strand, within H281DRAFT_03933at 32.333 kb on + strand, within H281DRAFT_03933at 32.372 kb on + strand, within H281DRAFT_03933at 32.540 kb on + strandat 32.559 kb on + strandat 32.559 kb on + strandat 32.559 kb on + strandat 32.560 kb on - strandat 32.560 kb on - strandat 32.587 kb on - strandat 32.686 kb on + strandat 32.686 kb on + strandat 32.687 kb on - strandat 32.800 kb on - strand, within H281DRAFT_03934at 32.800 kb on - strand, within H281DRAFT_03934at 32.924 kb on + strand, within H281DRAFT_03934at 33.019 kb on + strand, within H281DRAFT_03934at 33.020 kb on - strand, within H281DRAFT_03934at 33.020 kb on - strand, within H281DRAFT_03934at 33.020 kb on - strand, within H281DRAFT_03934at 33.020 kb on - strand, within H281DRAFT_03934at 33.312 kb on + strand, within H281DRAFT_03934at 33.376 kb on - strand, within H281DRAFT_03934at 33.429 kb on + strand, within H281DRAFT_03934at 33.430 kb on - strand, within H281DRAFT_03934at 33.520 kb on - strand, within H281DRAFT_03934at 33.586 kb on + strand, within H281DRAFT_03934at 33.586 kb on + strand, within H281DRAFT_03934at 33.588 kb on + strand, within H281DRAFT_03934at 33.588 kb on + strand, within H281DRAFT_03934at 33.589 kb on - strand, within H281DRAFT_03934at 33.589 kb on - strand, within H281DRAFT_03934at 33.589 kb on - strand, within H281DRAFT_03934at 33.589 kb on - strand, within H281DRAFT_03934at 33.589 kb on - strand, within H281DRAFT_03934at 33.589 kb on - strand, within H281DRAFT_03934

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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30,175 - H281DRAFT_03931 0.65 -0.8
30,256 + H281DRAFT_03931 0.76 +0.0
30,326 - H281DRAFT_03931 0.86 -3.2
30,505 + +0.2
30,505 + +0.1
30,505 + -0.4
30,860 - +0.7
30,988 + -0.2
31,199 - +0.4
31,306 - H281DRAFT_03933 0.16 +1.1
31,379 + H281DRAFT_03933 0.21 -0.4
31,380 - H281DRAFT_03933 0.21 +1.1
31,393 - H281DRAFT_03933 0.22 +1.1
31,435 + H281DRAFT_03933 0.25 +0.4
31,435 + H281DRAFT_03933 0.25 -0.1
31,436 - H281DRAFT_03933 0.25 +0.2
31,752 + H281DRAFT_03933 0.45 +0.5
31,752 + H281DRAFT_03933 0.45 -0.6
31,853 + H281DRAFT_03933 0.52 +0.5
31,853 + H281DRAFT_03933 0.52 -0.2
32,181 - H281DRAFT_03933 0.73 +0.4
32,265 + H281DRAFT_03933 0.79 +0.2
32,265 + H281DRAFT_03933 0.79 +0.2
32,265 + H281DRAFT_03933 0.79 -0.1
32,265 + H281DRAFT_03933 0.79 +0.0
32,265 + H281DRAFT_03933 0.79 +0.7
32,265 + H281DRAFT_03933 0.79 +0.2
32,266 - H281DRAFT_03933 0.79 -0.0
32,266 - H281DRAFT_03933 0.79 +0.6
32,266 - H281DRAFT_03933 0.79 +0.2
32,266 - H281DRAFT_03933 0.79 +0.2
32,266 - H281DRAFT_03933 0.79 +0.7
32,266 - H281DRAFT_03933 0.79 +0.3
32,267 + H281DRAFT_03933 0.79 -0.0
32,267 + H281DRAFT_03933 0.79 +0.3
32,268 - H281DRAFT_03933 0.79 -0.1
32,268 - H281DRAFT_03933 0.79 +0.5
32,268 - H281DRAFT_03933 0.79 +0.1
32,268 - H281DRAFT_03933 0.79 +1.1
32,333 + H281DRAFT_03933 0.83 +0.1
32,333 + H281DRAFT_03933 0.83 -0.1
32,372 + H281DRAFT_03933 0.86 +0.6
32,540 + -0.2
32,559 + +0.3
32,559 + +2.3
32,559 + +0.6
32,560 - +0.1
32,560 - +0.3
32,587 - +0.3
32,686 + -0.1
32,686 + -0.1
32,687 - -0.2
32,800 - H281DRAFT_03934 0.10 -0.4
32,800 - H281DRAFT_03934 0.10 +0.1
32,924 + H281DRAFT_03934 0.16 +0.2
33,019 + H281DRAFT_03934 0.21 +0.2
33,020 - H281DRAFT_03934 0.21 +0.3
33,020 - H281DRAFT_03934 0.21 -0.1
33,020 - H281DRAFT_03934 0.21 -0.2
33,020 - H281DRAFT_03934 0.21 +1.0
33,312 + H281DRAFT_03934 0.35 -0.4
33,376 - H281DRAFT_03934 0.38 +0.3
33,429 + H281DRAFT_03934 0.40 +0.2
33,430 - H281DRAFT_03934 0.40 +0.1
33,520 - H281DRAFT_03934 0.44 -1.0
33,586 + H281DRAFT_03934 0.48 -0.1
33,586 + H281DRAFT_03934 0.48 +0.9
33,588 + H281DRAFT_03934 0.48 +0.2
33,588 + H281DRAFT_03934 0.48 +0.4
33,589 - H281DRAFT_03934 0.48 +0.3
33,589 - H281DRAFT_03934 0.48 -0.8
33,589 - H281DRAFT_03934 0.48 -0.1
33,589 - H281DRAFT_03934 0.48 +0.9
33,589 - H281DRAFT_03934 0.48 +0.3
33,589 - H281DRAFT_03934 0.48 -0.2

Or see this region's nucleotide sequence