Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01498

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01497 and H281DRAFT_01498 are separated by 102 nucleotidesH281DRAFT_01498 and H281DRAFT_01499 are separated by 103 nucleotides H281DRAFT_01497: H281DRAFT_01497 - Predicted oxidoreductase, at 367,034 to 367,909 _01497 H281DRAFT_01498: H281DRAFT_01498 - transcriptional regulator, LysR family, at 368,012 to 368,908 _01498 H281DRAFT_01499: H281DRAFT_01499 - hypothetical protein, at 369,012 to 370,241 _01499 Position (kb) 368 369Strain fitness (log2 ratio) -1 0 1at 367.023 kb on - strandat 367.073 kb on + strandat 367.280 kb on + strand, within H281DRAFT_01497at 367.284 kb on + strand, within H281DRAFT_01497at 367.284 kb on + strand, within H281DRAFT_01497at 367.284 kb on + strand, within H281DRAFT_01497at 367.285 kb on - strand, within H281DRAFT_01497at 367.285 kb on - strand, within H281DRAFT_01497at 367.285 kb on - strand, within H281DRAFT_01497at 367.574 kb on + strand, within H281DRAFT_01497at 367.941 kb on + strandat 368.020 kb on - strandat 368.370 kb on + strand, within H281DRAFT_01498at 368.370 kb on + strand, within H281DRAFT_01498at 368.371 kb on - strand, within H281DRAFT_01498at 368.526 kb on - strand, within H281DRAFT_01498at 368.734 kb on - strand, within H281DRAFT_01498at 368.835 kb on - strandat 368.838 kb on - strandat 368.955 kb on + strandat 368.956 kb on - strandat 369.147 kb on + strand, within H281DRAFT_01499at 369.265 kb on + strand, within H281DRAFT_01499at 369.266 kb on - strand, within H281DRAFT_01499at 369.285 kb on + strand, within H281DRAFT_01499at 369.343 kb on + strand, within H281DRAFT_01499at 369.343 kb on + strand, within H281DRAFT_01499at 369.344 kb on - strand, within H281DRAFT_01499at 369.489 kb on + strand, within H281DRAFT_01499at 369.489 kb on + strand, within H281DRAFT_01499at 369.489 kb on + strand, within H281DRAFT_01499at 369.555 kb on + strand, within H281DRAFT_01499

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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367,023 - -1.1
367,073 + +0.0
367,280 + H281DRAFT_01497 0.28 -0.6
367,284 + H281DRAFT_01497 0.29 +1.1
367,284 + H281DRAFT_01497 0.29 -0.3
367,284 + H281DRAFT_01497 0.29 +0.2
367,285 - H281DRAFT_01497 0.29 -0.1
367,285 - H281DRAFT_01497 0.29 +0.6
367,285 - H281DRAFT_01497 0.29 -0.1
367,574 + H281DRAFT_01497 0.62 -0.3
367,941 + -0.2
368,020 - -0.1
368,370 + H281DRAFT_01498 0.40 -0.4
368,370 + H281DRAFT_01498 0.40 -0.6
368,371 - H281DRAFT_01498 0.40 -1.0
368,526 - H281DRAFT_01498 0.57 -0.4
368,734 - H281DRAFT_01498 0.80 +1.0
368,835 - +0.3
368,838 - +0.1
368,955 + -0.3
368,956 - -0.3
369,147 + H281DRAFT_01499 0.11 +0.2
369,265 + H281DRAFT_01499 0.21 +0.8
369,266 - H281DRAFT_01499 0.21 -0.8
369,285 + H281DRAFT_01499 0.22 -0.6
369,343 + H281DRAFT_01499 0.27 -0.3
369,343 + H281DRAFT_01499 0.27 -0.3
369,344 - H281DRAFT_01499 0.27 -1.2
369,489 + H281DRAFT_01499 0.39 -0.1
369,489 + H281DRAFT_01499 0.39 +0.3
369,489 + H281DRAFT_01499 0.39 +0.4
369,555 + H281DRAFT_01499 0.44 -0.4

Or see this region's nucleotide sequence