Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06421 and H281DRAFT_06422 are separated by 797 nucleotides H281DRAFT_06422 and H281DRAFT_06423 are separated by 66 nucleotides H281DRAFT_06423 and H281DRAFT_06424 are separated by 54 nucleotides
H281DRAFT_06421: H281DRAFT_06421 - methyl-accepting chemotaxis protein, at 21,760 to 22,971
_06421
H281DRAFT_06422: H281DRAFT_06422 - hypothetical protein, at 23,769 to 24,071
_06422
H281DRAFT_06423: H281DRAFT_06423 - hypothetical protein, at 24,138 to 24,344
_06423
H281DRAFT_06424: H281DRAFT_06424 - transcriptional regulator, LysR family, at 24,399 to 25,376
_06424
Position (kb) 23
24
25 Strain fitness (log2 ratio) -1
0
1 at 23.122 kb on + strand at 23.122 kb on + strand at 23.123 kb on - strand at 23.123 kb on - strand at 23.187 kb on + strand at 23.188 kb on - strand at 23.188 kb on - strand at 23.188 kb on - strand at 23.253 kb on - strand at 23.335 kb on - strand at 23.367 kb on - strand at 23.598 kb on + strand at 23.654 kb on + strand at 23.655 kb on - strand at 23.655 kb on - strand at 23.660 kb on + strand at 23.660 kb on + strand at 23.660 kb on + strand at 23.660 kb on + strand at 23.660 kb on + strand at 23.661 kb on - strand at 23.672 kb on + strand at 23.673 kb on - strand at 23.718 kb on - strand at 23.847 kb on - strand, within H281DRAFT_06422 at 23.861 kb on - strand, within H281DRAFT_06422 at 24.233 kb on + strand, within H281DRAFT_06423 at 24.342 kb on + strand at 24.400 kb on + strand at 24.400 kb on + strand at 24.401 kb on - strand at 24.401 kb on - strand at 24.606 kb on + strand, within H281DRAFT_06424 at 24.694 kb on + strand, within H281DRAFT_06424 at 24.698 kb on + strand, within H281DRAFT_06424 at 24.699 kb on - strand, within H281DRAFT_06424 at 24.750 kb on + strand, within H281DRAFT_06424 at 24.751 kb on - strand, within H281DRAFT_06424 at 24.751 kb on - strand, within H281DRAFT_06424 at 24.751 kb on - strand, within H281DRAFT_06424 at 24.822 kb on + strand, within H281DRAFT_06424 at 25.062 kb on - strand, within H281DRAFT_06424 at 25.062 kb on - strand, within H281DRAFT_06424
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 23,122 + -0.6 23,122 + +0.2 23,123 - -0.7 23,123 - -0.9 23,187 + +0.2 23,188 - -0.9 23,188 - -0.1 23,188 - +0.1 23,253 - +0.3 23,335 - +0.5 23,367 - -0.7 23,598 + +0.3 23,654 + +0.3 23,655 - -0.6 23,655 - +0.3 23,660 + -0.1 23,660 + +0.4 23,660 + +0.6 23,660 + -0.5 23,660 + +0.3 23,661 - -0.4 23,672 + -0.2 23,673 - -0.3 23,718 - +0.1 23,847 - H281DRAFT_06422 0.26 +0.6 23,861 - H281DRAFT_06422 0.30 +0.5 24,233 + H281DRAFT_06423 0.46 -0.1 24,342 + +0.9 24,400 + -0.1 24,400 + -1.2 24,401 - -0.2 24,401 - +0.2 24,606 + H281DRAFT_06424 0.21 -0.0 24,694 + H281DRAFT_06424 0.30 +0.1 24,698 + H281DRAFT_06424 0.31 +0.1 24,699 - H281DRAFT_06424 0.31 -0.2 24,750 + H281DRAFT_06424 0.36 -0.2 24,751 - H281DRAFT_06424 0.36 +0.1 24,751 - H281DRAFT_06424 0.36 +0.2 24,751 - H281DRAFT_06424 0.36 +0.2 24,822 + H281DRAFT_06424 0.43 +1.2 25,062 - H281DRAFT_06424 0.68 -1.4 25,062 - H281DRAFT_06424 0.68 -0.8
Or see this region's nucleotide sequence