Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05391 and H281DRAFT_05392 are separated by 178 nucleotides H281DRAFT_05392 and H281DRAFT_05393 are separated by 474 nucleotides
H281DRAFT_05391: H281DRAFT_05391 - S-formylglutathione hydrolase FrmB, at 153,539 to 154,411
_05391
H281DRAFT_05392: H281DRAFT_05392 - hypothetical protein, at 154,590 to 155,699
_05392
H281DRAFT_05393: H281DRAFT_05393 - Outer membrane protein (porin), at 156,174 to 157,334
_05393
Position (kb) 154
155
156 Strain fitness (log2 ratio) -2
-1
0
1 at 153.597 kb on + strand at 153.597 kb on + strand at 153.629 kb on + strand, within H281DRAFT_05391 at 153.629 kb on + strand, within H281DRAFT_05391 at 153.629 kb on + strand, within H281DRAFT_05391 at 153.700 kb on - strand, within H281DRAFT_05391 at 153.783 kb on + strand, within H281DRAFT_05391 at 153.784 kb on - strand, within H281DRAFT_05391 at 153.898 kb on - strand, within H281DRAFT_05391 at 153.898 kb on - strand, within H281DRAFT_05391 at 153.898 kb on - strand, within H281DRAFT_05391 at 154.027 kb on - strand, within H281DRAFT_05391 at 154.027 kb on - strand, within H281DRAFT_05391 at 154.095 kb on + strand, within H281DRAFT_05391 at 154.095 kb on + strand, within H281DRAFT_05391 at 154.233 kb on + strand, within H281DRAFT_05391 at 154.233 kb on + strand, within H281DRAFT_05391 at 154.233 kb on + strand, within H281DRAFT_05391 at 154.234 kb on - strand, within H281DRAFT_05391 at 154.234 kb on - strand, within H281DRAFT_05391 at 154.290 kb on + strand, within H281DRAFT_05391 at 154.291 kb on - strand, within H281DRAFT_05391 at 154.398 kb on - strand at 154.419 kb on + strand at 154.458 kb on + strand at 154.459 kb on - strand at 154.714 kb on + strand, within H281DRAFT_05392 at 154.741 kb on + strand, within H281DRAFT_05392 at 154.742 kb on - strand, within H281DRAFT_05392 at 154.973 kb on - strand, within H281DRAFT_05392 at 154.973 kb on - strand, within H281DRAFT_05392 at 155.147 kb on - strand, within H281DRAFT_05392 at 155.261 kb on - strand, within H281DRAFT_05392 at 155.261 kb on - strand, within H281DRAFT_05392 at 155.284 kb on + strand, within H281DRAFT_05392 at 155.285 kb on - strand, within H281DRAFT_05392 at 155.581 kb on + strand, within H281DRAFT_05392 at 155.582 kb on - strand at 155.706 kb on + strand at 155.707 kb on - strand at 155.853 kb on + strand at 155.912 kb on - strand at 155.912 kb on - strand at 155.985 kb on + strand at 156.027 kb on - strand at 156.058 kb on - strand at 156.097 kb on - strand at 156.097 kb on - strand at 156.112 kb on + strand at 156.113 kb on - strand at 156.113 kb on - strand at 156.265 kb on - strand at 156.265 kb on - strand at 156.322 kb on - strand, within H281DRAFT_05393 at 156.461 kb on + strand, within H281DRAFT_05393 at 156.461 kb on + strand, within H281DRAFT_05393 at 156.461 kb on + strand, within H281DRAFT_05393 at 156.462 kb on - strand, within H281DRAFT_05393 at 156.462 kb on - strand, within H281DRAFT_05393 at 156.462 kb on - strand, within H281DRAFT_05393 at 156.462 kb on - strand, within H281DRAFT_05393 at 156.549 kb on + strand, within H281DRAFT_05393 at 156.550 kb on - strand, within H281DRAFT_05393 at 156.607 kb on - strand, within H281DRAFT_05393 at 156.658 kb on - strand, within H281DRAFT_05393 at 156.658 kb on - strand, within H281DRAFT_05393 at 156.699 kb on + strand at 156.699 kb on + strand, within H281DRAFT_05393
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 153,597 + -0.6 153,597 + -0.0 153,629 + H281DRAFT_05391 0.10 -0.3 153,629 + H281DRAFT_05391 0.10 -0.0 153,629 + H281DRAFT_05391 0.10 -0.4 153,700 - H281DRAFT_05391 0.18 -0.0 153,783 + H281DRAFT_05391 0.28 -0.0 153,784 - H281DRAFT_05391 0.28 -0.1 153,898 - H281DRAFT_05391 0.41 -0.3 153,898 - H281DRAFT_05391 0.41 -1.3 153,898 - H281DRAFT_05391 0.41 -0.3 154,027 - H281DRAFT_05391 0.56 -0.4 154,027 - H281DRAFT_05391 0.56 +0.0 154,095 + H281DRAFT_05391 0.64 -0.3 154,095 + H281DRAFT_05391 0.64 +0.1 154,233 + H281DRAFT_05391 0.79 -0.8 154,233 + H281DRAFT_05391 0.79 -0.0 154,233 + H281DRAFT_05391 0.79 -0.2 154,234 - H281DRAFT_05391 0.80 +0.1 154,234 - H281DRAFT_05391 0.80 +0.3 154,290 + H281DRAFT_05391 0.86 -0.5 154,291 - H281DRAFT_05391 0.86 +0.1 154,398 - -0.5 154,419 + -0.5 154,458 + +0.4 154,459 - +0.5 154,714 + H281DRAFT_05392 0.11 +0.4 154,741 + H281DRAFT_05392 0.14 +0.4 154,742 - H281DRAFT_05392 0.14 -0.4 154,973 - H281DRAFT_05392 0.35 -0.0 154,973 - H281DRAFT_05392 0.35 -0.1 155,147 - H281DRAFT_05392 0.50 -1.0 155,261 - H281DRAFT_05392 0.60 -1.7 155,261 - H281DRAFT_05392 0.60 -1.5 155,284 + H281DRAFT_05392 0.63 +0.3 155,285 - H281DRAFT_05392 0.63 -0.6 155,581 + H281DRAFT_05392 0.89 -0.2 155,582 - -1.0 155,706 + -2.0 155,707 - +0.2 155,853 + -0.1 155,912 - -0.1 155,912 - +0.5 155,985 + +1.0 156,027 - -0.6 156,058 - +0.4 156,097 - +0.6 156,097 - +0.1 156,112 + +0.9 156,113 - +0.2 156,113 - +0.5 156,265 - +1.0 156,265 - +0.8 156,322 - H281DRAFT_05393 0.13 +0.1 156,461 + H281DRAFT_05393 0.25 -0.3 156,461 + H281DRAFT_05393 0.25 -0.6 156,461 + H281DRAFT_05393 0.25 +0.2 156,462 - H281DRAFT_05393 0.25 -0.7 156,462 - H281DRAFT_05393 0.25 +0.4 156,462 - H281DRAFT_05393 0.25 -0.2 156,462 - H281DRAFT_05393 0.25 -1.3 156,549 + H281DRAFT_05393 0.32 +0.9 156,550 - H281DRAFT_05393 0.32 +0.4 156,607 - H281DRAFT_05393 0.37 -0.4 156,658 - H281DRAFT_05393 0.42 -0.7 156,658 - H281DRAFT_05393 0.42 -1.5 156,699 + +1.0 156,699 + H281DRAFT_05393 0.45 +0.1
Or see this region's nucleotide sequence