Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05275 and H281DRAFT_05276 are separated by 12 nucleotides H281DRAFT_05276 and H281DRAFT_05277 overlap by 1 nucleotides H281DRAFT_05277 and H281DRAFT_05278 overlap by 1 nucleotides H281DRAFT_05278 and H281DRAFT_05279 overlap by 4 nucleotides
H281DRAFT_05275: H281DRAFT_05275 - transcriptional regulator, LysR family, at 18,037 to 18,978
_05275
H281DRAFT_05276: H281DRAFT_05276 - malonate decarboxylase epsilon subunit, at 18,991 to 19,923
_05276
H281DRAFT_05277: H281DRAFT_05277 - phosphoribosyl-dephospho-CoA transferase, at 19,923 to 20,630
_05277
H281DRAFT_05278: H281DRAFT_05278 - malonate decarboxylase gamma subunit, at 20,630 to 21,445
_05278
H281DRAFT_05279: H281DRAFT_05279 - malonate decarboxylase beta subunit, at 21,442 to 22,329
_05279
Position (kb) 19
20
21 Strain fitness (log2 ratio) -1
0
1 at 19.185 kb on - strand, within H281DRAFT_05276 at 19.473 kb on - strand, within H281DRAFT_05276 at 19.473 kb on - strand, within H281DRAFT_05276 at 19.571 kb on + strand, within H281DRAFT_05276 at 19.809 kb on + strand, within H281DRAFT_05276 at 20.778 kb on - strand, within H281DRAFT_05278 at 21.021 kb on - strand, within H281DRAFT_05278 at 21.093 kb on + strand, within H281DRAFT_05278 at 21.093 kb on + strand, within H281DRAFT_05278 at 21.094 kb on - strand, within H281DRAFT_05278 at 21.489 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 19,185 - H281DRAFT_05276 0.21 -0.9 19,473 - H281DRAFT_05276 0.52 -0.5 19,473 - H281DRAFT_05276 0.52 -0.6 19,571 + H281DRAFT_05276 0.62 -1.1 19,809 + H281DRAFT_05276 0.88 -0.5 20,778 - H281DRAFT_05278 0.18 -1.0 21,021 - H281DRAFT_05278 0.48 -0.6 21,093 + H281DRAFT_05278 0.57 -0.4 21,093 + H281DRAFT_05278 0.57 +0.2 21,094 - H281DRAFT_05278 0.57 -1.0 21,489 - +0.5
Or see this region's nucleotide sequence